MTBC Gene Atlas

Genome browser

Linear view of the M. tuberculosis complex genome (MTBC0 ancestral coordinates, H37Rv locus tags). Each arrow is a gene, pointing in its coding direction and coloured by annotation verdict. Click a gene to open its page.

◀ Pan left Pan right ▶ + Zoom in − Zoom out window 1 748 686–2 068 686 bp (320 000 bp)
+ strand − strand ileS (Rv1536) — requalified: isoleucine--tRNA ligase dinX (Rv1537) — requalified: DNA polymerase IV ansA (Rv1538c) — requalified: asparaginase lspA (Rv1539) — requalified: signal peptidase II Rv1540 (Rv1540) — requalified: RNA pseudouridine synthase lprI (Rv1541c) — family_assigned: MliC family protein glbN (Rv1542c) — requalified: group 1 truncated hemoglobin GlbN Rv1543 (Rv1543) — family_assigned: SDR family NAD(P)-dependent oxidoreductase Rv1544 (Rv1544) — family_assigned: SDR family oxidoreductase Rv1545 (Rv1545) — dark: hypothetical protein Rv1546 (Rv1546) — family_assigned: SRPBCC family protein dnaE1 (Rv1547) — family_assigned: DNA polymerase III subunit alpha plsB1 (Rv1551) — requalified: lysophospholipid acyltransferase frdA (Rv1552) — family_assigned: fumarate reductase (quinol) flavoprotein subunit frdB (Rv1553) — family_assigned: succinate dehydrogenase iron-sulfur subunit frdC (Rv1554) — family_assigned: fumarate reductase subunit C frdD (Rv1555) — family_assigned: fumarate reductase subunit FrdD Rv1556 (Rv1556) — family_assigned: TetR/AcrR family transcriptional regulator Rv1558 (Rv1558) — requalified: F420H(2)-dependent quinone reductase ilvA (Rv1559) — requalified: threonine ammonia-lyase vapC11 (Rv1561) — requalified: type II toxin-antitoxin system toxin ribonuclease VapC11 Rv1565c (Rv1565c) — family_assigned: acyltransferase family protein ripD (Rv1566c) — family_assigned: NlpC/P60 family peptidoglycan-binding protein RipD bioA (Rv1568) — requalified: adenosylmethionine--8-amino-7-oxononanoate transaminase bioD (Rv1570) — requalified: dethiobiotin synthase Rv1571 (Rv1571) — family_assigned: 2'-5' RNA ligase family protein Rv1573 (Rv1573) — dark: hypothetical protein Rv1576c (Rv1576c) — requalified: phage major capsid protein Rv1578c (Rv1578c) — family_assigned: phage terminase small subunit P27 family est12 (Rv1579c) — requalified: hypothetical protein Rv1580c (Rv1580c) — family_assigned: hypothetical protein Rv1581c (Rv1581c) — dark: hypothetical protein Rv1582c (Rv1582c) — family_assigned: phage/plasmid primase%2C P4 family Rv1583c (Rv1583c) — dark: DUF2742 domain-containing protein Rv1584c (Rv1584c) — family_assigned: hypothetical protein Rv1585c (Rv1585c) — family_assigned: hypothetical protein Rv1586c (Rv1586c) — family_assigned: recombinase family protein bioB (Rv1589) — requalified: biotin synthase BioB Rv1590 (Rv1590) — family_assigned: hypothetical protein Rv1591 (Rv1591) — dark: DUF2567 domain-containing protein Rv1592c (Rv1592c) — family_assigned: lipase family protein Rv1593c (Rv1593c) — family_assigned: NUDIX domain-containing protein nadB (Rv1595) — requalified: L-aspartate oxidase nadC (Rv1596) — requalified: carboxylating nicotinate-nucleotide diphosphorylase Rv1597 (Rv1597) — family_assigned: methyltransferase domain-containing protein Rv1598c (Rv1598c) — family_assigned: nitroreductase family deazaflavin-dependent oxidoreductase hisD (Rv1599) — requalified: histidinol dehydrogenase hisB (Rv1601) — requalified: imidazoleglycerol-phosphate dehydratase HisB hisH (Rv1602) — family_assigned: imidazole glycerol phosphate synthase subunit HisH hisA (Rv1603) — requalified: bifunctional 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino) impA (Rv1604) — family_assigned: inositol monophosphatase family protein hisF (Rv1605) — family_assigned: imidazole glycerol phosphate synthase subunit HisF hisI (Rv1606) — requalified: phosphoribosyl-AMP cyclohydrolase chaA (Rv1607) — requalified: calcium:proton antiporter bcpB (Rv1608c) — requalified: peroxiredoxin BcpB trpE (Rv1609) — requalified: anthranilate synthase component I Rv1610 (Rv1610) — family_assigned: TIGR02234 family membrane protein trpC (Rv1611) — requalified: indole-3-glycerol phosphate synthase TrpC trpA (Rv1613) — family_assigned: tryptophan synthase subunit alpha lgt (Rv1614) — requalified: prolipoprotein diacylglyceryl transferase Rv1615 (Rv1615) — family_assigned: TM2 domain-containing protein Rv1616 (Rv1616) — family_assigned: DUF2752 domain-containing protein pykA (Rv1617) — requalified: pyruvate kinase tesB1 (Rv1618) — requalified: acyl-CoA thioesterase II Rv1619 (Rv1619) — requalified: bifunctional lysylphosphatidylglycerol flippase/synthetase M cydC (Rv1620c) — family_assigned: thiol reductant ABC exporter subunit CydC cydB (Rv1622c) — family_assigned: cytochrome d ubiquinol oxidase subunit II Rv1624c (Rv1624c) — family_assigned: HdeD family acid-resistance protein cya (Rv1625c) — requalified: adenylate cyclase Rv1626 (Rv1626) — family_assigned: ANTAR domain-containing response regulator Rv1627c (Rv1627c) — requalified: lipid-transfer protein Rv1628c (Rv1628c) — family_assigned: Zn-ribbon domain-containing OB-fold protein polA (Rv1629) — requalified: DNA polymerase I rpsA (Rv1630) — requalified: 30S ribosomal protein S1 coaE (Rv1631) — requalified: dephospho-CoA kinase Rv1632c (Rv1632c) — family_assigned: DUF402 domain-containing protein Rv1634 (Rv1634) — requalified: MFS transporter Rv1635c (Rv1635c) — family_assigned: glycosyltransferase family 39 protein TB15.3 (Rv1636) — requalified: universal stress protein uvrA (Rv1638) — family_assigned: excinuclease ABC subunit UvrA Rv1639c (Rv1639c) — family_assigned: alpha/beta hydrolase family protein infC (Rv1641) — requalified: translation initiation factor IF-3 rplT (Rv1643) — requalified: 50S ribosomal protein L20 tsnR (Rv1644) — requalified: RNA methyltransferase Rv1645c (Rv1645c) — family_assigned: oxygenase MpaB family protein Rv1648 (Rv1648) — family_assigned: rhomboid-like protein pheT (Rv1650) — family_assigned: phenylalanine--tRNA ligase subunit beta argC (Rv1652) — requalified: N-acetyl-gamma-glutamyl-phosphate reductase argJ (Rv1653) — requalified: bifunctional glutamate N-acetyltransferase/amino-acid acetyl argB (Rv1654) — requalified: acetylglutamate kinase argD (Rv1655) — requalified: acetylornithine transaminase argF (Rv1656) — requalified: ornithine carbamoyltransferase argR (Rv1657) — requalified: arginine repressor argG (Rv1658) — requalified: argininosuccinate synthase argH (Rv1659) — requalified: argininosuccinate lyase pks10 (Rv1660) — requalified: type III polyketide synthase pks7 (Rv1661) — requalified: type I polyketide synthase pks9 (Rv1664) — requalified: type I polyketide synthase pks11 (Rv1665) — requalified: type III polyketide synthase cyp139 (Rv1666c) — requalified: cytochrome P450 Rv1669 (Rv1669) — dark: hypothetical protein Rv1670 (Rv1670) — family_assigned: DUF427 domain-containing protein Rv1671 (Rv1671) — dark: hypothetical protein Rv1672c (Rv1672c) — requalified: MFS transporter Rv1673c (Rv1673c) — family_assigned: transglutaminase family protein Rv1674c (Rv1674c) — family_assigned: metalloregulator ArsR/SmtB family transcription factor cmr (Rv1675c) — family_assigned: HTH-type transcriptional regulator Cmr Rv1676 (Rv1676) — family_assigned: peroxiredoxin-like family protein dsbF (Rv1677) — requalified: protein disulfide oxidoreductase Rv1678 (Rv1678) — family_assigned: hypothetical protein fadE16 (Rv1679) — family_assigned: acyl-CoA dehydrogenase family protein Rv1680 (Rv1680) — family_assigned: phosphate/phosphite/phosphonate ABC transporter substrate-bi moeX (Rv1681) — requalified: radical SAM protein Rv1683 (Rv1683) — requalified: acyl-CoA synthetase Rv1684 (Rv1684) — family_assigned: Trm112 family protein Rv1685c (Rv1685c) — family_assigned: TetR family transcriptional regulator Rv1687c (Rv1687c) — family_assigned: ABC transporter ATP-binding protein mpg (Rv1688) — requalified: DNA-3-methyladenine glycosylase tyrS (Rv1689) — requalified: tyrosine--tRNA ligase lprJ (Rv1690) — requalified: lipoprotein LprJ Rv1691 (Rv1691) — family_assigned: hypothetical protein Rv1692 (Rv1692) — family_assigned: HAD-IIA family hydrolase Rv1693 (Rv1693) — dark: hypothetical protein tlyA (Rv1694) — requalified: 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA ppnK (Rv1695) — requalified: NAD kinase recN (Rv1696) — requalified: DNA repair protein RecN steA (Rv1697) — family_assigned: putative cytokinetic ring protein SteA mctB (Rv1698) — requalified: copper transporter MctB pyrG (Rv1699) — requalified: CTP synthase Rv1700 (Rv1700) — requalified: ADP-ribose diphosphatase xerD (Rv1701) — requalified: site-specific tyrosine recombinase XerD Rv1702c (Rv1702c) — requalified: HNH endonuclease signature motif containing protein Rv1703c (Rv1703c) — requalified: O-methyltransferase cycA (Rv1704c) — requalified: amino acid permease Rv1707 (Rv1707) — family_assigned: SulP family inorganic anion transporter scpA (Rv1709) — requalified: segregation/condensation protein A scpB (Rv1710) — family_assigned: SMC-Scp complex subunit ScpB Rv1711 (Rv1711) — requalified: pseudouridine synthase cmk (Rv1712) — requalified: (d)CMP kinase engA (Rv1713) — requalified: ribosome biogenesis GTPase Der Rv1714 (Rv1714) — family_assigned: SDR family oxidoreductase Rv1717 (Rv1717) — family_assigned: cupin domain-containing protein Rv1718 (Rv1718) — requalified: 3-keto-5-aminohexanoate cleavage protein Rv1719 (Rv1719) — family_assigned: IclR family transcriptional regulator vapC12 (Rv1720c) — family_assigned: type II toxin-antitoxin system VapC family toxin vapB12 (Rv1721c) — requalified: antitoxin Rv1722 (Rv1722) — requalified: biotin carboxylase Rv1723 (Rv1723) — requalified: serine hydrolase Rv1724c (Rv1724c) — dark: hypothetical protein Rv1725c (Rv1725c) — family_assigned: winged helix-turn-helix transcriptional regulator Rv1726 (Rv1726) — requalified: FAD-binding oxidoreductase Rv1727 (Rv1727) — family_assigned: TIGR03086 family metal-binding protein Rv1728c (Rv1728c) — requalified: glycoside hydrolase Rv1729c (Rv1729c) — requalified: class I SAM-dependent methyltransferase Rv1730c (Rv1730c) — family_assigned: serine hydrolase domain-containing protein gabD2 (Rv1731) — requalified: succinic semialdehyde dehydrogenase Rv1732c (Rv1732c) — family_assigned: thioredoxin family protein Rv1733c (Rv1733c) — family_assigned: hypothetical protein narX (Rv1736c) — family_assigned: respiratory nitrate reductase subunit gamma narK2 (Rv1737c) — requalified: nitrate transporter NarK Rv1738 (Rv1738) — family_assigned: DUF1876 domain-containing protein Rv1739c (Rv1739c) — family_assigned: SulP family inorganic anion transporter vapB34 (Rv1740) — family_assigned: type II toxin-antitoxin system VapB family antitoxin vapC34 (Rv1741) — family_assigned: type II toxin-antitoxin system VapC family toxin Rv1742 (Rv1742) — family_assigned: hypothetical protein pknE (Rv1743) — requalified: serine/threonine protein kinase PknE Rv1744c (Rv1744c) — dark: hypothetical protein idi (Rv1745c) — requalified: isopentenyl-diphosphate Delta-isomerase pknF (Rv1746) — requalified: serine/threonine protein kinase PknF Rv1747 (Rv1747) — family_assigned: ATP-binding cassette domain-containing protein Rv1749c (Rv1749c) — family_assigned: DUF6790 family protein fadD1 (Rv1750c) — requalified: fatty-acid--CoA ligase FadD1 Rv1754c (Rv1754c) — requalified: DUF4185 domain-containing protein Rv1761c (Rv1761c) — family_assigned: DUF5073 family protein Rv1762c (Rv1762c) — family_assigned: heavy metal-binding domain-containing protein Rv1766 (Rv1766) — family_assigned: metal-sensitive transcriptional regulator Rv1767 (Rv1767) — family_assigned: carboxymuconolactone decarboxylase family protein Rv1769 (Rv1769) — requalified: amino acid deaminase/aldolase Rv1771 (Rv1771) — requalified: L-gulono-1%2C4-lactone dehydrogenase Rv1772 (Rv1772) — family_assigned: ANTAR domain-containing protein Rv1773c (Rv1773c) — family_assigned: IclR family transcriptional regulator Rv1774 (Rv1774) — requalified: FAD-binding oxidoreductase Rv1775 (Rv1775) — family_assigned: hypothetical protein Rv1776c (Rv1776c) — family_assigned: TetR/AcrR family transcriptional regulator Rv1778c (Rv1778c) — dark: hypothetical protein Rv1779c (Rv1779c) — dark: DUF4407 domain-containing protein Rv1780 (Rv1780) — family_assigned: hypothetical protein malQ (Rv1781c) — requalified: 4-alpha-glucanotransferase eccB5 (Rv1782) — family_assigned: type VII secretion system ESX-5 subunit EccB5 cyp143 (Rv1785c) — requalified: cytochrome P450 Rv1786 (Rv1786) — requalified: ferredoxin esxJ (Rv1038c) — requalified: type VII secretion system ESX-5 protein EsxJ Rv1794 (Rv1794) — family_assigned: ESX secretion-associated protein EspG eccD5 (Rv1795) — family_assigned: type VII secretion system ESX-5 subunit EccD5 mycP5 (Rv1796) — requalified: type VII secretion system ESX-5 serine protease mycosin MycP eccE5 (Rv1797) — family_assigned: type VII secretion system ESX-5 subunit EccE5 eccA5 (Rv1798) — family_assigned: type VII secretion system ESX-5 AAA family ATPase EccA5 lppT (Rv1799) — dark: hypothetical protein Rv1804c (Rv1804c) — requalified: DUF732 domain-containing protein 1 766 kb 1 819 kb 1 872 kb 1 926 kb 1 980 kb 2 033 kb

■ resolved (requalified)   ■ family assigned   ■ still unknown (dark)  ·  the centred gene is outlined in black.