Stable and regulatory RNAs

The 142 RNA entities annotated in H37Rv (Mycobrowser catalogue): small regulatory RNAs, transfer RNAs and ribosomal RNAs. They are served as a separate track: they are not coding genes, they are counted apart from the gene set and the still-unknown stock, and they receive none of the protein layers (Pfam, structure prediction, orthology, proteomics), which do not apply to RNA.

What this atlas adds to the legacy record is its own population signal: intra-MTBC variation over 145,209 genomes, with an explicit coverage control — a region whose neighbourhood is itself variant-poor cannot be called constrained. No function is inferred here; the product shown is Mycobrowser's.

142 entities

LocusNameTypeLength Common variantsProduct
MTB000001 ileT tRNA repeat-prone 74 nt n/a tRNA-Ile (GAT)
MTB000002 alaT tRNA repeat-prone 73 nt n/a tRNA-Ala (TGC)
MTB000003 leuT tRNA repeat-prone 83 nt n/a tRNA-Leu (CAG)
MTB000100 ncRv10071 ncRNA 201 nt 2 Putative small regulatory RNA
MTB000101 ncRv10071c ncRNA 91 nt 1 Putative small regulatory RNA
MTB000102 ncRv10128 ncRNA 116 nt 3 Putative small regulatory RNA
MTB000103 ncRv10128c ncRNA 48 nt 0 Putative small regulatory RNA
MTB000104 ncRv10150c ncRNA 50 nt 0 Putative small regulatory RNA
MTB000105 ncRv0179 ncRNA 159 nt 0 Putative small regulatory RNA
MTB000106 ncRv0186c ncRNA 60 nt 1 Putative small regulatory RNA
MTB000107 ncRv10243 ncRNA 61 nt 0 Putative small regulatory RNA
MTB000051 F6 ncRNA 102 nt 1 Putative small regulatory RNA
MTB000004 glyU tRNA repeat-prone 71 nt n/a tRNA-Gly (CCC)
MTB000108 ncRv0441c ncRNA 108 nt 1 Putative small regulatory RNA
MTB000109 ncRv10467 ncRNA 70 nt 1 Putative small regulatory RNA
MTB000060 mcr19 ncRNA 37 nt 0 Fragment of putative small regulatory RNA
MTB000110 ncRv0490 ncRNA 119 nt 1 Putative small regulatory RNA
MTB000005 tyrT tRNA repeat-prone 81 nt n/a tRNA-Tyr (GTA)
MTB000111 ncRv10609 ncRNA 62 nt 2 Putative small regulatory RNA
MTB000052 B55 ncRNA 61 nt 2 Putative small regulatory RNA
MTB000006 thrT tRNA repeat-prone 73 nt n/a tRNA-Thr (GGT)
MTB000007 metT tRNA repeat-prone 74 nt n/a tRNA-Met (CAT)
MTB000112 ncRv10637 ncRNA 99 nt 0 Putative small regulatory RNA
MTB000008 trpT tRNA repeat-prone 73 nt n/a tRNA-Trp (CCA)
MTB000113 ncRv0638 ncRNA 127 nt 1 Putative small regulatory RNA
MTB000114 ncRv0641 ncRNA 119 nt 1 Putative small regulatory RNA
MTB000115 ncRv10666 ncRNA 132 nt 3 Putative small regulatory RNA
MTB000116 ncRv10685 ncRNA 54 nt 1 Putative small regulatory RNA
MTB000117 ncRv10699 ncRNA 118 nt 3 Putative small regulatory RNA
MTB000118 ncRv0724 ncRNA 269 nt 0 Putative small regulatory RNA
MTB000009 thrV tRNA repeat-prone 72 nt n/a tRNA-Thr (TGT)
MTB000119 ncRv0810c ncRNA 90 nt 2 Putative small regulatory RNA
MTB000053 ASdes ncRNA 195 nt 3 Putative small regulatory RNA
MTB000010 lysT tRNA repeat-prone 73 nt n/a tRNA-Lys (TTT)
MTB000011 gluT tRNA repeat-prone 74 nt n/a tRNA-Glu (TTC)
MTB000012 aspT tRNA repeat-prone 74 nt n/a tRNA-Asp (GTC)
MTB000013 pheU tRNA repeat-prone 74 nt n/a tRNA-Phe (GAA)
MTB000120 ncRv10860 ncRNA 51 nt 0 Putative small regulatory RNA
MTB000121 ncRv0897 ncRNA 108 nt 2 Putative small regulatory RNA
MTB000014 argT tRNA repeat-prone 73 nt n/a tRNA-Arg (CCT)
MTB000122 ncRv0952 ncRNA 133 nt 1 Putative small regulatory RNA
MTB000015 alaV tRNA repeat-prone 73 nt n/a tRNA-Ala (CGC)
MTB000123 ncRv10996 ncRNA 59 nt 0 Putative small regulatory RNA
MTB000016 glnT tRNA repeat-prone 72 nt n/a tRNA-Gln (TTG)
MTB000124 ncRv11042c ncRNA 66 nt 1 Putative small regulatory RNA
MTB000061 mpr5 ncRNA 91 nt 0 Fragment of putative small regulatory RNA
MTB000017 leuX tRNA repeat-prone 74 nt n/a tRNA-Leu (TAA)
MTB000125 ncRv1072 ncRNA 98 nt 2 Putative small regulatory RNA
MTB000074 MTS0858 ncRNA 100 nt 2 Putative small regulatory RNA
MTB000126 ncRv11144c ncRNA 44 nt 0 Putative small regulatory RNA
MTB000127 ncRv11147c ncRNA 65 nt 1 Putative small regulatory RNA
MTB000072 mcr10 ncRNA 123 nt 2 Putative small regulatory RNA
MTB000128 ncRv11179c ncRNA 110 nt 0 Putative small regulatory RNA
MTB000075 ncrMT1234 ncRNA 48 nt 0 Fragment of putative small regulatory RNA
MTB000129 ncRv11199 ncRNA 54 nt 0 Putative small regulatory RNA
MTB000062 mpr6 ncRNA 92 nt 3 Fragment of putative small regulatory RNA
MTB000063 mcr11 ncRNA 131 nt 0 Putative small regulatory RNA
MTB000130 ncRv11264c ncRNA 123 nt 1 Putative small regulatory RNA
MTB000018 argV tRNA repeat-prone 73 nt n/a tRNA-Arg (CCG)
MTB000131 ncRv1298 ncRNA 76 nt 0 Putative small regulatory RNA
MTB000132 ncRv11298 ncRNA 56 nt 0 Putative small regulatory RNA
MTB000064 mcr3 ncRNA 124 nt 2 Putative small regulatory RNA
MTB000019 rrs rRNA repeat-prone 1537 nt n/a Ribosomal RNA 16S
MTB000133 ncRv11315 ncRNA 119 nt 0 Putative small regulatory RNA
MTB000020 rrl rRNA repeat-prone 3138 nt n/a Ribosomal RNA 23S
MTB000021 rrf rRNA repeat-prone 115 nt n/a Ribosomal RNA 5S
MTB000134 ncRv1329 ncRNA 89 nt 0 Putative small regulatory RNA
MTB000022 leuW tRNA repeat-prone 84 nt n/a tRNA-Leu (TAG)
MTB000065 mcr15 ncRNA 300 nt 2 Putative small regulatory RNA
MTB000076 MTS1082 ncRNA 140 nt 1 Putative small regulatory RNA
MTB000135 ncRv1389 ncRNA 203 nt 2 Putative small regulatory RNA
MTB000136 ncRv1501 ncRNA 86 nt 1 Putative small regulatory RNA
MTB000137 ncRv1617 ncRNA 105 nt 0 Putative small regulatory RNA
MTB000138 ncRv1621c ncRNA 108 nt 0 Putative small regulatory RNA
MTB000023 leuV tRNA repeat-prone 74 nt n/a tRNA-Leu (CAA)
MTB000054 G2 ncRNA 229 nt 1 Putative small regulatory RNA
MTB000024 proT tRNA repeat-prone 74 nt n/a tRNA-Pro (GGG)
MTB000055 AS1726 ncRNA 213 nt 3 Putative small regulatory RNA
MTB000139 ncRv11733 ncRNA 108 nt 0 Putative small regulatory RNA
MTB000077 MTS1338 ncRNA 117 nt 1 Putative small regulatory RNA
MTB000140 ncRv11793 ncRNA 53 nt 0 Putative small regulatory RNA
MTB000141 ncRv1821 ncRNA 100 nt 1 Putative small regulatory RNA
MTB000142 ncRv11846 ncRNA 102 nt 0 Putative small regulatory RNA
MTB000056 AS1890 ncRNA 238 nt 1 Putative small regulatory RNA
MTB000143 ncRv12023 ncRNA 68 nt 1 Putative small regulatory RNA
MTB000057 ASpks ncRNA 142 nt 0 Putative small regulatory RNA
MTB000025 leuU tRNA repeat-prone 86 nt n/a tRNA-Leu (GAG)
MTB000066 mcr5 ncRNA 44 nt 1 Fragment of putative small regulatory RNA
MTB000144 ncRv12220 ncRNA 48 nt 1 Putative small regulatory RNA
MTB000026 rnpB misc_RNA 307 nt 3 Ribonuclease P RNA
MTB000027 valV tRNA repeat-prone 72 nt n/a tRNA-Val (TAC)
MTB000073 mcr16 ncRNA 103 nt 1 Putative small regulatory RNA
MTB000028 metV tRNA repeat-prone 74 nt n/a tRNA-Met (CAT)
MTB000029 asnT tRNA repeat-prone 73 nt n/a tRNA-Asn (GTT)
MTB000067 mcr7 ncRNA 350 nt 6 Putative small regulatory RNA
MTB000145 ncRv12459 ncRNA 76 nt 1 Putative small regulatory RNA
MTB000030 proU tRNA repeat-prone 74 nt n/a tRNA-Pro (TGG)
MTB000031 glyV tRNA repeat-prone 71 nt n/a tRNA-Gly (TCC)
MTB000032 argW tRNA repeat-prone 74 nt n/a tRNA-Arg (TCT)
MTB000033 hisT tRNA repeat-prone 73 nt n/a tRNA-His (GTG)
MTB000034 lysU tRNA repeat-prone 73 nt n/a tRNA-Lys (CTT)
MTB000146 ncRv12557 ncRNA 58 nt 0 Putative small regulatory RNA
MTB000068 mpr11 ncRNA 69 nt 0 Fragment of putative small regulatory RNA
MTB000069 mpr12 ncRNA 92 nt 1 Fragment of putative small regulatory RNA
MTB000147 ncRv12641 ncRNA 41 nt 2 Putative small regulatory RNA
MTB000035 valT tRNA repeat-prone 72 nt n/a tRNA-Val (CAC)
MTB000036 glyT tRNA repeat-prone 73 nt n/a tRNA-Gly (GCC)
MTB000037 cysU tRNA repeat-prone 71 nt n/a tRNA-Cys (GCA)
MTB000038 valU tRNA repeat-prone 72 nt n/a tRNA-Val (GAC)
MTB000148 ncRv12783c ncRNA 126 nt 2 Putative small regulatory RNA
MTB000149 ncRv2986c ncRNA 104 nt 1 Putative small regulatory RNA
MTB000039 gluU tRNA repeat-prone 73 nt n/a tRNA-Glu (CTC)
MTB000040 glnU tRNA repeat-prone 72 nt n/a tRNA-Gln (CTG)
MTB000150 ncRv2993c ncRNA 125 nt 1 Putative small regulatory RNA
MTB000151 ncRv13003c ncRNA 124 nt 0 Putative small regulatory RNA
MTB000041 alaU tRNA repeat-prone 73 nt n/a tRNA-Ala (GGC)
MTB000042 ssr misc_RNA 368 nt 1 10Sa RNA
MTB000043 metU tRNA repeat-prone 74 nt n/a tRNA-fMet (CAT)
MTB000152 ncRv3220 ncRNA 109 nt 1 Putative small regulatory RNA
MTB000153 ncRv13303 ncRNA 119 nt 1 Putative small regulatory RNA
MTB000154 ncRv13418cA ncRNA 162 nt 1 Putative small regulatory RNA
MTB000155 ncRv13418cB ncRNA 113 nt 1 Putative small regulatory RNA
MTB000156 ncRv3461c ncRNA 64 nt 0 Putative small regulatory RNA
MTB000157 ncRv3520 ncRNA 260 nt 3 Putative small regulatory RNA
MTB000070 mpr17 ncRNA 60 nt 0 Fragment of putative small regulatory RNA
MTB000044 thrU tRNA repeat-prone 73 nt n/a tRNA-Thr (CGT)
MTB000158 ncRv3648c ncRNA 84 nt 2 Putative small regulatory RNA
MTB000071 mpr18 ncRNA 55 nt 0 Fragment of putative small regulatory RNA
MTB000159 ncRv13660c ncRNA 94 nt 0 Putative small regulatory RNA
MTB000058 B11 ncRNA 93 nt 0 Putative small regulatory RNA
MTB000078 MTS2823 ncRNA 300 nt 4 Putative small regulatory RNA
MTB000045 proY tRNA repeat-prone 74 nt n/a tRNA-Pro (CGG)
MTB000059 C8 ncRNA 128 nt 1 Possible 4.5S RNA in signal recognition particle (small cytoplasmic RNA) (SC-RNA)
MTB000160 ncRv13722c ncRNA 90 nt 0 Putative small regulatory RNA
MTB000046 serV tRNA repeat-prone 86 nt n/a tRNA-Ser (GGA)
MTB000047 serX tRNA repeat-prone 87 nt n/a tRNA-Ser (CGA)
MTB000048 argU tRNA repeat-prone 73 nt n/a tRNA-Arg (ACG)
MTB000049 serT tRNA repeat-prone 89 nt n/a tRNA-Ser (GCT)
MTB000050 serU tRNA repeat-prone 87 nt n/a tRNA-Ser (TGA)
MTB000161 ncRv3804c ncRNA 183 nt 3 Putative small regulatory RNA
MTB000079 ncrMT3949 ncRNA 94 nt 2 Fragment of putative small regulatory RNA
MTB000080 MTS2975 ncRNA 93 nt 2 Putative small regulatory RNA

Source: Mycobrowser v5 (stable RNAs) for the descriptive record; intra-MTBC variation and coverage control computed here.