Stable and regulatory RNAs
The 142 RNA entities annotated in H37Rv (Mycobrowser catalogue): small regulatory RNAs, transfer RNAs and ribosomal RNAs. They are served as a separate track: they are not coding genes, they are counted apart from the gene set and the still-unknown stock, and they receive none of the protein layers (Pfam, structure prediction, orthology, proteomics), which do not apply to RNA.
What this atlas adds to the legacy record is its own population signal: intra-MTBC variation over 145,209 genomes, with an explicit coverage control — a region whose neighbourhood is itself variant-poor cannot be called constrained. No function is inferred here; the product shown is Mycobrowser's.
142 entities
| Locus | Name | Type | Length | Common variants | Product |
|---|---|---|---|---|---|
| MTB000001 | ileT | tRNA repeat-prone | 74 nt | n/a | tRNA-Ile (GAT) |
| MTB000002 | alaT | tRNA repeat-prone | 73 nt | n/a | tRNA-Ala (TGC) |
| MTB000003 | leuT | tRNA repeat-prone | 83 nt | n/a | tRNA-Leu (CAG) |
| MTB000100 | ncRv10071 | ncRNA | 201 nt | 2 | Putative small regulatory RNA |
| MTB000101 | ncRv10071c | ncRNA | 91 nt | 1 | Putative small regulatory RNA |
| MTB000102 | ncRv10128 | ncRNA | 116 nt | 3 | Putative small regulatory RNA |
| MTB000103 | ncRv10128c | ncRNA | 48 nt | 0 | Putative small regulatory RNA |
| MTB000104 | ncRv10150c | ncRNA | 50 nt | 0 | Putative small regulatory RNA |
| MTB000105 | ncRv0179 | ncRNA | 159 nt | 0 | Putative small regulatory RNA |
| MTB000106 | ncRv0186c | ncRNA | 60 nt | 1 | Putative small regulatory RNA |
| MTB000107 | ncRv10243 | ncRNA | 61 nt | 0 | Putative small regulatory RNA |
| MTB000051 | F6 | ncRNA | 102 nt | 1 | Putative small regulatory RNA |
| MTB000004 | glyU | tRNA repeat-prone | 71 nt | n/a | tRNA-Gly (CCC) |
| MTB000108 | ncRv0441c | ncRNA | 108 nt | 1 | Putative small regulatory RNA |
| MTB000109 | ncRv10467 | ncRNA | 70 nt | 1 | Putative small regulatory RNA |
| MTB000060 | mcr19 | ncRNA | 37 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000110 | ncRv0490 | ncRNA | 119 nt | 1 | Putative small regulatory RNA |
| MTB000005 | tyrT | tRNA repeat-prone | 81 nt | n/a | tRNA-Tyr (GTA) |
| MTB000111 | ncRv10609 | ncRNA | 62 nt | 2 | Putative small regulatory RNA |
| MTB000052 | B55 | ncRNA | 61 nt | 2 | Putative small regulatory RNA |
| MTB000006 | thrT | tRNA repeat-prone | 73 nt | n/a | tRNA-Thr (GGT) |
| MTB000007 | metT | tRNA repeat-prone | 74 nt | n/a | tRNA-Met (CAT) |
| MTB000112 | ncRv10637 | ncRNA | 99 nt | 0 | Putative small regulatory RNA |
| MTB000008 | trpT | tRNA repeat-prone | 73 nt | n/a | tRNA-Trp (CCA) |
| MTB000113 | ncRv0638 | ncRNA | 127 nt | 1 | Putative small regulatory RNA |
| MTB000114 | ncRv0641 | ncRNA | 119 nt | 1 | Putative small regulatory RNA |
| MTB000115 | ncRv10666 | ncRNA | 132 nt | 3 | Putative small regulatory RNA |
| MTB000116 | ncRv10685 | ncRNA | 54 nt | 1 | Putative small regulatory RNA |
| MTB000117 | ncRv10699 | ncRNA | 118 nt | 3 | Putative small regulatory RNA |
| MTB000118 | ncRv0724 | ncRNA | 269 nt | 0 | Putative small regulatory RNA |
| MTB000009 | thrV | tRNA repeat-prone | 72 nt | n/a | tRNA-Thr (TGT) |
| MTB000119 | ncRv0810c | ncRNA | 90 nt | 2 | Putative small regulatory RNA |
| MTB000053 | ASdes | ncRNA | 195 nt | 3 | Putative small regulatory RNA |
| MTB000010 | lysT | tRNA repeat-prone | 73 nt | n/a | tRNA-Lys (TTT) |
| MTB000011 | gluT | tRNA repeat-prone | 74 nt | n/a | tRNA-Glu (TTC) |
| MTB000012 | aspT | tRNA repeat-prone | 74 nt | n/a | tRNA-Asp (GTC) |
| MTB000013 | pheU | tRNA repeat-prone | 74 nt | n/a | tRNA-Phe (GAA) |
| MTB000120 | ncRv10860 | ncRNA | 51 nt | 0 | Putative small regulatory RNA |
| MTB000121 | ncRv0897 | ncRNA | 108 nt | 2 | Putative small regulatory RNA |
| MTB000014 | argT | tRNA repeat-prone | 73 nt | n/a | tRNA-Arg (CCT) |
| MTB000122 | ncRv0952 | ncRNA | 133 nt | 1 | Putative small regulatory RNA |
| MTB000015 | alaV | tRNA repeat-prone | 73 nt | n/a | tRNA-Ala (CGC) |
| MTB000123 | ncRv10996 | ncRNA | 59 nt | 0 | Putative small regulatory RNA |
| MTB000016 | glnT | tRNA repeat-prone | 72 nt | n/a | tRNA-Gln (TTG) |
| MTB000124 | ncRv11042c | ncRNA | 66 nt | 1 | Putative small regulatory RNA |
| MTB000061 | mpr5 | ncRNA | 91 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000017 | leuX | tRNA repeat-prone | 74 nt | n/a | tRNA-Leu (TAA) |
| MTB000125 | ncRv1072 | ncRNA | 98 nt | 2 | Putative small regulatory RNA |
| MTB000074 | MTS0858 | ncRNA | 100 nt | 2 | Putative small regulatory RNA |
| MTB000126 | ncRv11144c | ncRNA | 44 nt | 0 | Putative small regulatory RNA |
| MTB000127 | ncRv11147c | ncRNA | 65 nt | 1 | Putative small regulatory RNA |
| MTB000072 | mcr10 | ncRNA | 123 nt | 2 | Putative small regulatory RNA |
| MTB000128 | ncRv11179c | ncRNA | 110 nt | 0 | Putative small regulatory RNA |
| MTB000075 | ncrMT1234 | ncRNA | 48 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000129 | ncRv11199 | ncRNA | 54 nt | 0 | Putative small regulatory RNA |
| MTB000062 | mpr6 | ncRNA | 92 nt | 3 | Fragment of putative small regulatory RNA |
| MTB000063 | mcr11 | ncRNA | 131 nt | 0 | Putative small regulatory RNA |
| MTB000130 | ncRv11264c | ncRNA | 123 nt | 1 | Putative small regulatory RNA |
| MTB000018 | argV | tRNA repeat-prone | 73 nt | n/a | tRNA-Arg (CCG) |
| MTB000131 | ncRv1298 | ncRNA | 76 nt | 0 | Putative small regulatory RNA |
| MTB000132 | ncRv11298 | ncRNA | 56 nt | 0 | Putative small regulatory RNA |
| MTB000064 | mcr3 | ncRNA | 124 nt | 2 | Putative small regulatory RNA |
| MTB000019 | rrs | rRNA repeat-prone | 1537 nt | n/a | Ribosomal RNA 16S |
| MTB000133 | ncRv11315 | ncRNA | 119 nt | 0 | Putative small regulatory RNA |
| MTB000020 | rrl | rRNA repeat-prone | 3138 nt | n/a | Ribosomal RNA 23S |
| MTB000021 | rrf | rRNA repeat-prone | 115 nt | n/a | Ribosomal RNA 5S |
| MTB000134 | ncRv1329 | ncRNA | 89 nt | 0 | Putative small regulatory RNA |
| MTB000022 | leuW | tRNA repeat-prone | 84 nt | n/a | tRNA-Leu (TAG) |
| MTB000065 | mcr15 | ncRNA | 300 nt | 2 | Putative small regulatory RNA |
| MTB000076 | MTS1082 | ncRNA | 140 nt | 1 | Putative small regulatory RNA |
| MTB000135 | ncRv1389 | ncRNA | 203 nt | 2 | Putative small regulatory RNA |
| MTB000136 | ncRv1501 | ncRNA | 86 nt | 1 | Putative small regulatory RNA |
| MTB000137 | ncRv1617 | ncRNA | 105 nt | 0 | Putative small regulatory RNA |
| MTB000138 | ncRv1621c | ncRNA | 108 nt | 0 | Putative small regulatory RNA |
| MTB000023 | leuV | tRNA repeat-prone | 74 nt | n/a | tRNA-Leu (CAA) |
| MTB000054 | G2 | ncRNA | 229 nt | 1 | Putative small regulatory RNA |
| MTB000024 | proT | tRNA repeat-prone | 74 nt | n/a | tRNA-Pro (GGG) |
| MTB000055 | AS1726 | ncRNA | 213 nt | 3 | Putative small regulatory RNA |
| MTB000139 | ncRv11733 | ncRNA | 108 nt | 0 | Putative small regulatory RNA |
| MTB000077 | MTS1338 | ncRNA | 117 nt | 1 | Putative small regulatory RNA |
| MTB000140 | ncRv11793 | ncRNA | 53 nt | 0 | Putative small regulatory RNA |
| MTB000141 | ncRv1821 | ncRNA | 100 nt | 1 | Putative small regulatory RNA |
| MTB000142 | ncRv11846 | ncRNA | 102 nt | 0 | Putative small regulatory RNA |
| MTB000056 | AS1890 | ncRNA | 238 nt | 1 | Putative small regulatory RNA |
| MTB000143 | ncRv12023 | ncRNA | 68 nt | 1 | Putative small regulatory RNA |
| MTB000057 | ASpks | ncRNA | 142 nt | 0 | Putative small regulatory RNA |
| MTB000025 | leuU | tRNA repeat-prone | 86 nt | n/a | tRNA-Leu (GAG) |
| MTB000066 | mcr5 | ncRNA | 44 nt | 1 | Fragment of putative small regulatory RNA |
| MTB000144 | ncRv12220 | ncRNA | 48 nt | 1 | Putative small regulatory RNA |
| MTB000026 | rnpB | misc_RNA | 307 nt | 3 | Ribonuclease P RNA |
| MTB000027 | valV | tRNA repeat-prone | 72 nt | n/a | tRNA-Val (TAC) |
| MTB000073 | mcr16 | ncRNA | 103 nt | 1 | Putative small regulatory RNA |
| MTB000028 | metV | tRNA repeat-prone | 74 nt | n/a | tRNA-Met (CAT) |
| MTB000029 | asnT | tRNA repeat-prone | 73 nt | n/a | tRNA-Asn (GTT) |
| MTB000067 | mcr7 | ncRNA | 350 nt | 6 | Putative small regulatory RNA |
| MTB000145 | ncRv12459 | ncRNA | 76 nt | 1 | Putative small regulatory RNA |
| MTB000030 | proU | tRNA repeat-prone | 74 nt | n/a | tRNA-Pro (TGG) |
| MTB000031 | glyV | tRNA repeat-prone | 71 nt | n/a | tRNA-Gly (TCC) |
| MTB000032 | argW | tRNA repeat-prone | 74 nt | n/a | tRNA-Arg (TCT) |
| MTB000033 | hisT | tRNA repeat-prone | 73 nt | n/a | tRNA-His (GTG) |
| MTB000034 | lysU | tRNA repeat-prone | 73 nt | n/a | tRNA-Lys (CTT) |
| MTB000146 | ncRv12557 | ncRNA | 58 nt | 0 | Putative small regulatory RNA |
| MTB000068 | mpr11 | ncRNA | 69 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000069 | mpr12 | ncRNA | 92 nt | 1 | Fragment of putative small regulatory RNA |
| MTB000147 | ncRv12641 | ncRNA | 41 nt | 2 | Putative small regulatory RNA |
| MTB000035 | valT | tRNA repeat-prone | 72 nt | n/a | tRNA-Val (CAC) |
| MTB000036 | glyT | tRNA repeat-prone | 73 nt | n/a | tRNA-Gly (GCC) |
| MTB000037 | cysU | tRNA repeat-prone | 71 nt | n/a | tRNA-Cys (GCA) |
| MTB000038 | valU | tRNA repeat-prone | 72 nt | n/a | tRNA-Val (GAC) |
| MTB000148 | ncRv12783c | ncRNA | 126 nt | 2 | Putative small regulatory RNA |
| MTB000149 | ncRv2986c | ncRNA | 104 nt | 1 | Putative small regulatory RNA |
| MTB000039 | gluU | tRNA repeat-prone | 73 nt | n/a | tRNA-Glu (CTC) |
| MTB000040 | glnU | tRNA repeat-prone | 72 nt | n/a | tRNA-Gln (CTG) |
| MTB000150 | ncRv2993c | ncRNA | 125 nt | 1 | Putative small regulatory RNA |
| MTB000151 | ncRv13003c | ncRNA | 124 nt | 0 | Putative small regulatory RNA |
| MTB000041 | alaU | tRNA repeat-prone | 73 nt | n/a | tRNA-Ala (GGC) |
| MTB000042 | ssr | misc_RNA | 368 nt | 1 | 10Sa RNA |
| MTB000043 | metU | tRNA repeat-prone | 74 nt | n/a | tRNA-fMet (CAT) |
| MTB000152 | ncRv3220 | ncRNA | 109 nt | 1 | Putative small regulatory RNA |
| MTB000153 | ncRv13303 | ncRNA | 119 nt | 1 | Putative small regulatory RNA |
| MTB000154 | ncRv13418cA | ncRNA | 162 nt | 1 | Putative small regulatory RNA |
| MTB000155 | ncRv13418cB | ncRNA | 113 nt | 1 | Putative small regulatory RNA |
| MTB000156 | ncRv3461c | ncRNA | 64 nt | 0 | Putative small regulatory RNA |
| MTB000157 | ncRv3520 | ncRNA | 260 nt | 3 | Putative small regulatory RNA |
| MTB000070 | mpr17 | ncRNA | 60 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000044 | thrU | tRNA repeat-prone | 73 nt | n/a | tRNA-Thr (CGT) |
| MTB000158 | ncRv3648c | ncRNA | 84 nt | 2 | Putative small regulatory RNA |
| MTB000071 | mpr18 | ncRNA | 55 nt | 0 | Fragment of putative small regulatory RNA |
| MTB000159 | ncRv13660c | ncRNA | 94 nt | 0 | Putative small regulatory RNA |
| MTB000058 | B11 | ncRNA | 93 nt | 0 | Putative small regulatory RNA |
| MTB000078 | MTS2823 | ncRNA | 300 nt | 4 | Putative small regulatory RNA |
| MTB000045 | proY | tRNA repeat-prone | 74 nt | n/a | tRNA-Pro (CGG) |
| MTB000059 | C8 | ncRNA | 128 nt | 1 | Possible 4.5S RNA in signal recognition particle (small cytoplasmic RNA) (SC-RNA) |
| MTB000160 | ncRv13722c | ncRNA | 90 nt | 0 | Putative small regulatory RNA |
| MTB000046 | serV | tRNA repeat-prone | 86 nt | n/a | tRNA-Ser (GGA) |
| MTB000047 | serX | tRNA repeat-prone | 87 nt | n/a | tRNA-Ser (CGA) |
| MTB000048 | argU | tRNA repeat-prone | 73 nt | n/a | tRNA-Arg (ACG) |
| MTB000049 | serT | tRNA repeat-prone | 89 nt | n/a | tRNA-Ser (GCT) |
| MTB000050 | serU | tRNA repeat-prone | 87 nt | n/a | tRNA-Ser (TGA) |
| MTB000161 | ncRv3804c | ncRNA | 183 nt | 3 | Putative small regulatory RNA |
| MTB000079 | ncrMT3949 | ncRNA | 94 nt | 2 | Fragment of putative small regulatory RNA |
| MTB000080 | MTS2975 | ncRNA | 93 nt | 2 | Putative small regulatory RNA |
Source: Mycobrowser v5 (stable RNAs) for the descriptive record; intra-MTBC variation and coverage control computed here.