MTBC Gene Atlas

Genome browser

Linear view of the M. tuberculosis complex genome (MTBC0 ancestral coordinates, H37Rv locus tags). Each arrow is a gene, pointing in its coding direction and coloured by annotation verdict. Click a gene to open its page.

◀ Pan left Pan right ▶ + Zoom in − Zoom out window 3 586 150–3 906 150 bp (320 000 bp)
+ strand − strand Rv3194c (Rv3194c) — family_assigned: PDZ domain-containing protein Rv3195 (Rv3195) — requalified: zinc-dependent metalloprotease Rv3197 (Rv3197) — family_assigned: AarF/ABC1/UbiB kinase family protein uvrD2 (Rv3198c) — requalified: ATP-dependent DNA helicase UvrD2 nudC (Rv3199c) — requalified: NAD(+) diphosphatase Rv3200c (Rv3200c) — family_assigned: potassium channel family protein adnB (Rv3201c) — requalified: ATP-dependent DNA helicase AdnB adnA (Rv3202c) — requalified: ATP-dependent DNA helicase AdnA Rv3204 (Rv3204) — family_assigned: MGMT family protein Rv3208 (Rv3208) — family_assigned: TetR/AcrR family transcriptional regulator Rv3209 (Rv3209) — family_assigned: MmpS family transport accessory protein Rv3210c (Rv3210c) — family_assigned: ferritin-like fold-containing protein rhlE (Rv3211) — requalified: DEAD/DEAH box helicase Rv3212 (Rv3212) — family_assigned: hypothetical protein Rv3213c (Rv3213c) — family_assigned: AAA family ATPase entC (Rv3215) — requalified: isochorismate synthase Rv3217c (Rv3217c) — dark: hypothetical protein Rv3218 (Rv3218) — family_assigned: diacylglycerol kinase family lipid kinase Rv3220c (Rv3220c) — family_assigned: histidine kinase N-terminal domain-containing protein TB7.3 (Rv3221c) — requalified: biotin/lipoyl-binding carrier protein Rv3222c (Rv3222c) — family_assigned: hypothetical protein sigH (Rv3223c) — family_assigned: sigma-70 family RNA polymerase sigma factor SigH Rv3224 (Rv3224) — requalified: NAD(P)-dependent oxidoreductase Rv3225c (Rv3225c) — family_assigned: bifunctional GNAT family N-acetyltransferase/aminoglycoside Rv3226c (Rv3226c) — requalified: SOS response-associated peptidase aroA (Rv3227) — requalified: 3-phosphoshikimate 1-carboxyvinyltransferase rsgA (Rv3228) — family_assigned: ribosome small subunit-dependent GTPase A Rv3230c (Rv3230c) — requalified: NADPH oxidoreductase Rv3231c (Rv3231c) — family_assigned: hypothetical protein Rv3237c (Rv3237c) — family_assigned: cation:proton antiporter regulatory subunit Rv3238c (Rv3238c) — family_assigned: isoprenylcysteine carboxylmethyltransferase family protein Rv3239c (Rv3239c) — requalified: MFS transporter raiA (Rv3241c) — requalified: ribosome-associated translation inhibitor RaiA Rv3242c (Rv3242c) — family_assigned: ComF family protein Rv3243c (Rv3243c) — family_assigned: LmeA family phospholipid-binding protein lpqB (Rv3244c) — requalified: MtrAB system accessory lipoprotein LpqB mtrB (Rv3245c) — requalified: two-component system sensor histidine kinase MtrB mtrA (Rv3246c) — requalified: two-component system response regulator MtrA tmk (Rv3247c) — requalified: dTMP kinase sahH (Rv3248c) — requalified: adenosylhomocysteinase Rv3249c (Rv3249c) — family_assigned: TetR family transcriptional regulator rubB (Rv3250c) — requalified: rubredoxin RubB rubA (Rv3251c) — requalified: rubredoxin alkB (Rv3252c) — requalified: alkane 1-monooxygenase Rv3253c (Rv3253c) — requalified: amino acid permease Rv3254 (Rv3254) — requalified: oxidoreductase manA (Rv3255c) — requalified: mannose-6-phosphate isomerase%2C class I Rv3256c (Rv3256c) — requalified: TobH protein pmmA (Rv3257c) — requalified: phosphomannomutase/phosphoglucomutase Rv3259 (Rv3259) — family_assigned: metallopeptidase family protein fbiA (Rv3261) — requalified: 2-phospho-L-lactate transferase fbiB (Rv3262) — requalified: coenzyme F420-0:L-glutamate ligase Rv3263 (Rv3263) — requalified: class I SAM-dependent methyltransferase rmlD (Rv3266c) — requalified: dTDP-4-dehydrorhamnose reductase lcp1 (Rv3267) — requalified: phosphotransferase Lcp1 Rv3269 (Rv3269) — family_assigned: DUF1490 family protein ctpC (Rv3270) — requalified: manganese-exporting P-type ATPase CtpC Rv3271c (Rv3271c) — requalified: cation transporter Rv3272 (Rv3272) — requalified: CoA transferase fadE25 (Rv3274c) — requalified: acyl-CoA dehydrogenase purE (Rv3275c) — requalified: 5-(carboxyamino)imidazole ribonucleotide mutase purK (Rv3276c) — requalified: 5-(carboxyamino)imidazole ribonucleotide synthase Rv3278c (Rv3278c) — family_assigned: PH domain-containing protein birA (Rv3279c) — requalified: biotin--[acetyl-CoA-carboxylase] ligase accD5 (Rv3280) — family_assigned: acyl-CoA carboxylase subunit beta accE5 (Rv3281) — family_assigned: acyl-CoA carboxylase subunit epsilon Rv3282 (Rv3282) — requalified: nucleoside triphosphate pyrophosphatase sseA (Rv3283) — requalified: sulfurtransferase Rv3284 (Rv3284) — family_assigned: SufE family protein accA3 (Rv3285) — family_assigned: acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alph sigF (Rv3286c) — requalified: RNA polymerase sigma factor SigF rsbW (Rv3287c) — requalified: anti-sigma B factor RsbW Rv3289c (Rv3289c) — dark: hypothetical protein lat (Rv3290c) — requalified: L-lysine 6-transaminase lrpA (Rv3291c) — family_assigned: transcriptional regulator LrpA Rv3292 (Rv3292) — family_assigned: VOC family protein Rv3295 (Rv3295) — family_assigned: TetR/AcrR family transcriptional regulator lhr (Rv3296) — requalified: ATP-dependent helicase nei (Rv3297) — requalified: endonuclease VIII Nei2 lpqC (Rv3298c) — family_assigned: PHB depolymerase family esterase atsB (Rv3299c) — requalified: arylsulfatase AtsB Rv3300c (Rv3300c) — family_assigned: RluA family pseudouridine synthase phoY1 (Rv3301c) — requalified: phosphate signaling complex protein PhoU glpD2 (Rv3302c) — requalified: glycerol-3-phosphate dehydrogenase/oxidase lpdA (Rv3303c) — requalified: NAD(P)H-quinone dehydrogenase Rv3304 (Rv3304) — requalified: gamma-glutamylcyclotransferase deoD (Rv3307) — requalified: purine-nucleoside phosphorylase pmmB (Rv3308) — requalified: phospho-sugar mutase upp (Rv3309c) — requalified: uracil phosphoribosyltransferase sapM (Rv3310) — requalified: phosphatidylinositol-3-phosphatase Rv3311 (Rv3311) — family_assigned: primosomal protein Rv3312c (Rv3312c) — family_assigned: alpha/beta hydrolase add (Rv3313c) — requalified: adenosine deaminase deoA (Rv3314c) — requalified: thymidine phosphorylase cdd (Rv3315c) — requalified: cytidine deaminase sdhC (Rv3316) — family_assigned: succinate dehydrogenase%2C cytochrome b556 subunit sdhD (Rv3317) — family_assigned: succinate dehydrogenase hydrophobic membrane anchor subunit sdhA (Rv3318) — family_assigned: succinate dehydrogenase flavoprotein subunit sdhB (Rv3319) — family_assigned: succinate dehydrogenase iron-sulfur subunit vapC44 (Rv3320c) — family_assigned: type II toxin-antitoxin system VapC family toxin vapB44 (Rv3321c) — family_assigned: CopG family transcriptional regulator moaC3 (Rv3324c) — requalified: cyclic pyranopterin monophosphate synthase MoaC Rv3327 (Rv3327) — family_assigned: IS110 family transposase sigJ (Rv3328c) — family_assigned: sigma-70 family RNA polymerase sigma factor SigJ dacB1 (Rv3330) — requalified: D-alanyl-D-alanine carboxypeptidase DacB1 nagA (Rv3332) — requalified: N-acetylglucosamine-6-phosphate deacetylase prp1 (Rv3333c) — requalified: PDZ-interacting protease regulator Ppr1 Rv3334 (Rv3334) — family_assigned: hypoxia response transcriptional regulator yhjD (Rv3335c) — requalified: inner membrane protein YhjD trpS (Rv3336c) — requalified: tryptophan--tRNA ligase icd1 (Rv3339c) — requalified: NADP-dependent isocitrate dehydrogenase metC (Rv3340) — requalified: bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase metA (Rv3341) — requalified: homoserine O-acetyltransferase Rv3342 (Rv3342) — requalified: class I SAM-dependent methyltransferase Rv3346c (Rv3346c) — dark: DUF3017 domain-containing protein Rv3353c (Rv3353c) — requalified: oxidoreductase Rv3354 (Rv3354) — requalified: DUF732 domain-containing protein Rv3355c (Rv3355c) — dark: DUF3017 domain-containing protein relJ (Rv3357) — requalified: type II toxin-antitoxin system antitoxin RelJ relK (Rv3358) — family_assigned: Txe/YoeB family addiction module toxin Rv3359 (Rv3359) — requalified: NADH:flavin oxidoreductase Rv3360 (Rv3360) — family_assigned: FHA domain-containing protein mfpA (Rv3361c) — requalified: pentapeptide repeat protein MfpA Rv3362c (Rv3362c) — family_assigned: ATP/GTP-binding protein Rv3363c (Rv3363c) — family_assigned: DUF742 domain-containing protein Rv3364c (Rv3364c) — requalified: serine protease inhibitor Rv3365c (Rv3365c) — requalified: sensor histidine kinase spoU (Rv3366) — requalified: tRNA (cytidine(34)-2'-O)-methyltransferase Rv3368c (Rv3368c) — family_assigned: nitroreductase family protein Rv3371 (Rv3371) — requalified: diacylglycerol O-acyltransferase otsB2 (Rv3372) — requalified: trehalose-phosphatase amiD (Rv3375) — requalified: amidase Rv3376 (Rv3376) — family_assigned: HAD family phosphatase Rv3377c (Rv3377c) — requalified: type B diterpene cyclase Rv3378c (Rv3378c) — requalified: diterpene synthase idsB (Rv3383c) — family_assigned: polyprenyl synthetase family protein vapC46 (Rv3384c) — family_assigned: type II toxin-antitoxin system VapC family toxin htdY (Rv3389c) — requalified: 3-hydroxyacyl-thioester dehydratase HtdY lpqD (Rv3390) — family_assigned: histidine phosphatase family protein acrA1 (Rv3391) — family_assigned: SDR family oxidoreductase cmaA1 (Rv3392c) — requalified: cyclopropane mycolic acid synthase CmaA1 iunH (Rv3393) — requalified: nucleoside hydrolase IunH Rv3394c (Rv3394c) — family_assigned: DNA polymerase Y family protein Rv3395c (Rv3395c) — family_assigned: hypothetical protein guaA (Rv3396c) — requalified: glutamine-hydrolyzing GMP synthase phyA (Rv3397c) — requalified: presqualene diphosphate synthase HpnD Rv3400 (Rv3400) — family_assigned: beta-phosphoglucomutase family hydrolase Rv3401 (Rv3401) — family_assigned: glycoside hydrolase family 65 protein Rv3402c (Rv3402c) — family_assigned: DegT/DnrJ/EryC1/StrS family aminotransferase Rv3403c (Rv3403c) — family_assigned: FAD/NAD(P)-binding protein Rv3404c (Rv3404c) — requalified: dTDP-4-amino-4%2C6-dideoxyglucose formyltransferase Rv3405c (Rv3405c) — family_assigned: helix-turn-helix domain-containing protein Rv3406 (Rv3406) — requalified: alpha-ketoglutarate-dependent sulfate ester dioxygenase vapC47 (Rv3408) — family_assigned: type II toxin-antitoxin system VapC family toxin choD (Rv3409c) — requalified: cholesterol oxidase guaB3 (Rv3410c) — family_assigned: GuaB3 family IMP dehydrogenase-related protein guaB2 (Rv3411c) — requalified: IMP dehydrogenase Rv3412 (Rv3412) — dark: DUF5319 domain-containing protein rsdA (Rv3413c) — requalified: anti-sigma D factor RsdA Rv3415c (Rv3415c) — family_assigned: hypothetical protein whiB3 (Rv3416) — family_assigned: redox-responsive transcriptional regulator WhiB3 groEL1 (Rv3417c) — requalified: chaperonin GroEL gcp (Rv3419c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex rimI (Rv3420c) — requalified: ribosomal protein S18-alanine N-acetyltransferase tsaB (Rv3421c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex tsaE (Rv3422c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex istB (Rv3427c) — family_assigned: IS21-like element ISMt2 family helper ATPase IstB Rv3424c (Rv3424c) — dark: hypothetical protein gadB (Rv3432c) — requalified: glutamate decarboxylase Rv3433c (Rv3433c) — requalified: NAD(P)H-hydrate dehydratase Rv3434c (Rv3434c) — family_assigned: rhomboid-like protein Rv3435c (Rv3435c) — family_assigned: DUF4436 domain-containing protein glmS (Rv3436c) — requalified: glutamine--fructose-6-phosphate transaminase (isomerizing) Rv3437 (Rv3437) — dark: DUF2510 domain-containing protein Rv3438 (Rv3438) — family_assigned: alpha/beta hydrolase Rv3439c (Rv3439c) — family_assigned: hypothetical protein Rv3440c (Rv3440c) — family_assigned: hypothetical protein mrsA (Rv3441c) — requalified: phosphoglucosamine mutase rpsI (Rv3442c) — requalified: 30S ribosomal protein S9 rplM (Rv3443c) — requalified: 50S ribosomal protein L13 esxT (Rv3444c) — family_assigned: WXG100 family type VII secretion target esxU (Rv3445c) — requalified: type VII secretion system ESX-4 protein EsxU Rv3446c (Rv3446c) — family_assigned: type VII secretion-associated protein eccC4 (Rv3447c) — family_assigned: type VII secretion system ESX-4 FtsK/SpoIIIE family ATPase E eccD4 (Rv3448) — family_assigned: type VII secretion system ESX-4 subunit EccD4 mycP4 (Rv3449) — requalified: type VII secretion system ESX-4 serine protease mycosin MycP eccB4 (Rv3450c) — family_assigned: type VII secretion system ESX-4 subunit EccB4 cut3 (Rv3451) — family_assigned: cutinase family protein cut4 (Rv3452) — requalified: cutinase Cut4 rplQ (Rv3456c) — requalified: 50S ribosomal protein L17 rpoA (Rv3457c) — family_assigned: DNA-directed RNA polymerase subunit alpha rpsD (Rv3458c) — requalified: 30S ribosomal protein S4 rpsK (Rv3459c) — requalified: 30S ribosomal protein S11 rpsM (Rv3460c) — requalified: 30S ribosomal protein S13 3 638 kb 3 692 kb 3 745 kb 3 798 kb 3 852 kb 3 906 kb

■ resolved (requalified)   ■ family assigned   ■ still unknown (dark)  ·  the centred gene is outlined in black.