MTBC Gene Atlas

Genome browser

Linear view of the M. tuberculosis complex genome (MTBC0 ancestral coordinates, H37Rv locus tags). Each arrow is a gene, pointing in its coding direction and coloured by annotation verdict. Click a gene to open its page.

◀ Pan left Pan right ▶ + Zoom in − Zoom out window 4 008 368–4 088 368 bp (80 000 bp)
+ strand − strand fadA5 (Rv3546) — requalified: steroid 3-ketoacyl-CoA thiolase ddn (Rv3547) — requalified: deazaflavin-dependent nitroreductase Ddn Rv3548c (Rv3548c) — family_assigned: SDR family oxidoreductase Rv3549c (Rv3549c) — family_assigned: SDR family oxidoreductase echA20 (Rv3550) — family_assigned: enoyl-CoA hydratase family protein Rv3551 (Rv3551) — family_assigned: CoA transferase subunit A Rv3552 (Rv3552) — family_assigned: CoA-transferase subunit beta Rv3553 (Rv3553) — requalified: nitronate monooxygenase fdxB (Rv3554) — requalified: fatty acid desaturase Rv3555c (Rv3555c) — family_assigned: DUF559 domain-containing protein fadA6 (Rv3556c) — requalified: acetyl-CoA C-acetyltransferase kstR2 (Rv3557c) — family_assigned: TetR family transcriptional regulator KstR2 Rv3559c (Rv3559c) — family_assigned: SDR family oxidoreductase fadE30 (Rv3560c) — family_assigned: acyl-CoA dehydrogenase family protein fadD3 (Rv3561) — requalified: 3-((3aS%2C4S%2C7aS)-7a-methyl-1%2C5-dioxo-octahydro-1H-inden fadE31 (Rv3562) — family_assigned: acyl-CoA dehydrogenase family protein fadE32 (Rv3563) — family_assigned: acyl-CoA dehydrogenase family protein fadE33 (Rv3564) — family_assigned: acyl-CoA dehydrogenase family protein aspB (Rv3565) — requalified: pyridoxal phosphate-dependent aminotransferase hsaB (Rv3567c) — family_assigned: flavin-dependent monooxygenase reductase subunit HsaB hsaC (Rv3568c) — requalified: iron-dependent extradiol dioxygenase HsaC hsaD (Rv3569c) — requalified: alpha/beta fold hydrolase hsaA (Rv3570c) — family_assigned: flavin-dependent monooxygenase oxygenase subunit HsaA kshB (Rv3571) — family_assigned: 3-ketosteroid-9-alpha-hydroxylase reductase subunit Rv3572 (Rv3572) — family_assigned: hypothetical protein fadE34 (Rv3573c) — requalified: acyl-CoA dehydrogenase fadE34 kstR (Rv3574) — family_assigned: cholesterol catabolism transcriptional regulator KstR Rv3575c (Rv3575c) — family_assigned: LacI family DNA-binding transcriptional regulator arsB2 (Rv3578) — requalified: arsenic transport integral membrane protein ArsB rlmB (Rv3579c) — requalified: 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB ispF (Rv3581c) — requalified: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase ispD (Rv3582c) — requalified: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase carD (Rv3583c) — requalified: RNA polymerase-binding transcription factor CarD lpqE (Rv3584) — family_assigned: hypothetical protein radA (Rv3585) — requalified: DNA repair protein RadA disA (Rv3586) — requalified: DNA integrity scanning diadenylate cyclase DisA Rv3587c (Rv3587c) — family_assigned: hypothetical protein canB (Rv3588c) — requalified: beta-carbonic anhydrase CanB mutY (Rv3589) — requalified: A/G-specific adenine glycosylase Rv3591c (Rv3591c) — family_assigned: alpha/beta hydrolase mhuD (Rv3592) — requalified: mycobilin-forming heme oxygenase MhuD lpqF (Rv3593) — requalified: serine hydrolase Rv3594 (Rv3594) — requalified: N-acetylmuramoyl-L-alanine amidase lsr2 (Rv3597c) — requalified: histone-like nucleoid-structuring protein Lsr2 lysS (Rv3598c) — requalified: lysine--tRNA ligase Rv3600c (Rv3600c) — requalified: type III pantothenate kinase panD (Rv3601c) — requalified: aspartate 1-decarboxylase panC (Rv3602c) — requalified: pantoate--beta-alanine ligase Rv3603c (Rv3603c) — family_assigned: Rossmann-like and DUF2520 domain-containing protein Rv3604c (Rv3604c) — dark: DUF6779 domain-containing protein Rv3605c (Rv3605c) — family_assigned: DUF3180 domain-containing protein folK (Rv3606c) — requalified: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphok folE (Rv3609c) — requalified: GTP cyclohydrolase I FolE ftsH (Rv3610c) — requalified: ATP-dependent zinc metalloprotease FtsH ftsH Rv3612c (Rv3612c) — dark: hypothetical protein Rv3613c (Rv3613c) — family_assigned: hypothetical protein espD (Rv3614c) — requalified: type VII secretion system ESX-1 target EspD espC (Rv3615c) — requalified: type VII secretion system ESX-1 filament-forming target EspC espA (Rv3616c) — requalified: type VII secretion system ESX-1 target EspA ephA (Rv3617) — requalified: epoxide hydrolase EphA Rv3618 (Rv3618) — requalified: LLM class flavin-dependent oxidoreductase esxI (Rv1037c) — requalified: type VII secretion system ESX-5 protein EsxL esxW (Rv3620c) — requalified: type VII secretion system protein EsxW lpqG (Rv3623) — family_assigned: SIMPL domain-containing protein hpt (Rv3624c) — requalified: hypoxanthine phosphoribosyltransferase mesJ (Rv3625c) — requalified: tRNA lysidine(34) synthetase TilS 4 010 kb 4 023 kb 4 036 kb 4 050 kb 4 064 kb 4 077 kb

■ resolved (requalified)   ■ family assigned   ■ still unknown (dark)  ·  the centred gene is outlined in black.