MTBC Gene Atlas

Genome browser

Linear view of the M. tuberculosis complex genome (MTBC0 ancestral coordinates, H37Rv locus tags). Each arrow is a gene, pointing in its coding direction and coloured by annotation verdict. Click a gene to open its page.

◀ Pan left Pan right ▶ + Zoom in − Zoom out window 3 716 013–3 876 013 bp (160 000 bp)
+ strand − strand deoD (Rv3307) — requalified: purine-nucleoside phosphorylase pmmB (Rv3308) — requalified: phospho-sugar mutase upp (Rv3309c) — requalified: uracil phosphoribosyltransferase sapM (Rv3310) — requalified: phosphatidylinositol-3-phosphatase Rv3311 (Rv3311) — family_assigned: primosomal protein Rv3312c (Rv3312c) — family_assigned: alpha/beta hydrolase add (Rv3313c) — requalified: adenosine deaminase deoA (Rv3314c) — requalified: thymidine phosphorylase cdd (Rv3315c) — requalified: cytidine deaminase sdhC (Rv3316) — family_assigned: succinate dehydrogenase%2C cytochrome b556 subunit sdhD (Rv3317) — family_assigned: succinate dehydrogenase hydrophobic membrane anchor subunit sdhA (Rv3318) — family_assigned: succinate dehydrogenase flavoprotein subunit sdhB (Rv3319) — family_assigned: succinate dehydrogenase iron-sulfur subunit vapC44 (Rv3320c) — family_assigned: type II toxin-antitoxin system VapC family toxin vapB44 (Rv3321c) — family_assigned: CopG family transcriptional regulator moaC3 (Rv3324c) — requalified: cyclic pyranopterin monophosphate synthase MoaC Rv3327 (Rv3327) — family_assigned: IS110 family transposase sigJ (Rv3328c) — family_assigned: sigma-70 family RNA polymerase sigma factor SigJ dacB1 (Rv3330) — requalified: D-alanyl-D-alanine carboxypeptidase DacB1 nagA (Rv3332) — requalified: N-acetylglucosamine-6-phosphate deacetylase prp1 (Rv3333c) — requalified: PDZ-interacting protease regulator Ppr1 Rv3334 (Rv3334) — family_assigned: hypoxia response transcriptional regulator yhjD (Rv3335c) — requalified: inner membrane protein YhjD trpS (Rv3336c) — requalified: tryptophan--tRNA ligase icd1 (Rv3339c) — requalified: NADP-dependent isocitrate dehydrogenase metC (Rv3340) — requalified: bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase metA (Rv3341) — requalified: homoserine O-acetyltransferase Rv3342 (Rv3342) — requalified: class I SAM-dependent methyltransferase Rv3346c (Rv3346c) — dark: DUF3017 domain-containing protein Rv3353c (Rv3353c) — requalified: oxidoreductase Rv3354 (Rv3354) — requalified: DUF732 domain-containing protein Rv3355c (Rv3355c) — dark: DUF3017 domain-containing protein relJ (Rv3357) — requalified: type II toxin-antitoxin system antitoxin RelJ relK (Rv3358) — family_assigned: Txe/YoeB family addiction module toxin Rv3359 (Rv3359) — requalified: NADH:flavin oxidoreductase Rv3360 (Rv3360) — family_assigned: FHA domain-containing protein mfpA (Rv3361c) — requalified: pentapeptide repeat protein MfpA Rv3362c (Rv3362c) — family_assigned: ATP/GTP-binding protein Rv3363c (Rv3363c) — family_assigned: DUF742 domain-containing protein Rv3364c (Rv3364c) — requalified: serine protease inhibitor Rv3365c (Rv3365c) — requalified: sensor histidine kinase spoU (Rv3366) — requalified: tRNA (cytidine(34)-2'-O)-methyltransferase Rv3368c (Rv3368c) — family_assigned: nitroreductase family protein Rv3371 (Rv3371) — requalified: diacylglycerol O-acyltransferase otsB2 (Rv3372) — requalified: trehalose-phosphatase amiD (Rv3375) — requalified: amidase Rv3376 (Rv3376) — family_assigned: HAD family phosphatase Rv3377c (Rv3377c) — requalified: type B diterpene cyclase Rv3378c (Rv3378c) — requalified: diterpene synthase idsB (Rv3383c) — family_assigned: polyprenyl synthetase family protein vapC46 (Rv3384c) — family_assigned: type II toxin-antitoxin system VapC family toxin htdY (Rv3389c) — requalified: 3-hydroxyacyl-thioester dehydratase HtdY lpqD (Rv3390) — family_assigned: histidine phosphatase family protein acrA1 (Rv3391) — family_assigned: SDR family oxidoreductase cmaA1 (Rv3392c) — requalified: cyclopropane mycolic acid synthase CmaA1 iunH (Rv3393) — requalified: nucleoside hydrolase IunH Rv3394c (Rv3394c) — family_assigned: DNA polymerase Y family protein Rv3395c (Rv3395c) — family_assigned: hypothetical protein guaA (Rv3396c) — requalified: glutamine-hydrolyzing GMP synthase phyA (Rv3397c) — requalified: presqualene diphosphate synthase HpnD Rv3400 (Rv3400) — family_assigned: beta-phosphoglucomutase family hydrolase Rv3401 (Rv3401) — family_assigned: glycoside hydrolase family 65 protein Rv3402c (Rv3402c) — family_assigned: DegT/DnrJ/EryC1/StrS family aminotransferase Rv3403c (Rv3403c) — family_assigned: FAD/NAD(P)-binding protein Rv3404c (Rv3404c) — requalified: dTDP-4-amino-4%2C6-dideoxyglucose formyltransferase Rv3405c (Rv3405c) — family_assigned: helix-turn-helix domain-containing protein Rv3406 (Rv3406) — requalified: alpha-ketoglutarate-dependent sulfate ester dioxygenase vapC47 (Rv3408) — family_assigned: type II toxin-antitoxin system VapC family toxin choD (Rv3409c) — requalified: cholesterol oxidase guaB3 (Rv3410c) — family_assigned: GuaB3 family IMP dehydrogenase-related protein guaB2 (Rv3411c) — requalified: IMP dehydrogenase Rv3412 (Rv3412) — dark: DUF5319 domain-containing protein rsdA (Rv3413c) — requalified: anti-sigma D factor RsdA Rv3415c (Rv3415c) — family_assigned: hypothetical protein whiB3 (Rv3416) — family_assigned: redox-responsive transcriptional regulator WhiB3 groEL1 (Rv3417c) — requalified: chaperonin GroEL gcp (Rv3419c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex rimI (Rv3420c) — requalified: ribosomal protein S18-alanine N-acetyltransferase tsaB (Rv3421c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex tsaE (Rv3422c) — family_assigned: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex istB (Rv3427c) — family_assigned: IS21-like element ISMt2 family helper ATPase IstB Rv3424c (Rv3424c) — dark: hypothetical protein 3 736 kb 3 763 kb 3 790 kb 3 816 kb 3 842 kb 3 869 kb

■ resolved (requalified)   ■ family assigned   ■ still unknown (dark)  ·  the centred gene is outlined in black.