Genes
3906 genes matched.
| Gene | MTBC0 | Legacy (H37Rv) | MTBC0 PGAP / revised | Pfam | Verdict |
|---|---|---|---|---|---|
| Rv3060c Rv3060c |
mtbc0_003252 |
GntR family transcriptional regulator | FCD domain-containing protein. Pfam: GntR (PF00392.28), FCD (PF07729.18). | GntR FCD |
Family assigned |
| fadE22 Rv3061c |
mtbc0_003253 |
acyl-CoA dehydrogenase FadE22 | Acyl-CoA dehydrogenase. Pfam: Acyl-CoA_dh_N (PF02771.22), Acyl-CoA_dh_1 (PF00441.30), Acyl-CoA_dh_M (PF02770.25). | Acyl-CoA_dh_N Acyl-CoA_dh_1 Acyl-CoA_dh_M |
Resolved |
| ligB Rv3062 |
mtbc0_003254 |
DNA ligase | ATP-dependent DNA ligase. Pfam: DNA_ligase_A_N (PF04675.20), DNA_ligase_A_M (PF01068.27), DNA_ligase_A_C (PF04679.22). | DNA_ligase_A_N DNA_ligase_A_M DNA_ligase_A_C |
Resolved |
| cstA Rv3063 |
mtbc0_003255 |
carbon starvation protein A | Carbon starvation CstA family protein. Pfam: CstA (PF02554.21). | CstA |
Family assigned |
| Rv3064c Rv3064c |
mtbc0_003256 |
integral membrane protein | DoxX family protein. Pfam: DoxX (PF07681.18). | DoxX |
Family assigned |
| mmr Rv3065 |
- |
multidrug resistance protein Mmr | Multidrug resistance protein Mmr. Pfam: Multi_Drug_Res (PF00893.26). | Multi_Drug_Res |
Resolved |
| Rv3066 Rv3066 |
mtbc0_003258 |
DeoR family transcriptional regulator | TetR/AcrR family transcriptional regulator. Pfam: TetR_N (PF00440.30), TetR_C_31 (PF17940.7). | TetR_N TetR_C_31 |
Family assigned |
| Rv3067 Rv3067 |
- |
hypothetical protein | Conserved hypothetical protein; DUF domain(s) DUF732. Function unknown. Foldseek best (non-significant) hit: 3j9x-assembly1_A A Virus that Infects a Hyperthermophile Encapsidates (prob 0.16, TM 0.56). | DUF732 |
Still unknown |
| pgmA Rv3068c |
mtbc0_003261 |
phosphoglucomutase PgmA | Phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosphate-dependent). Pfam: PGM_PMM_I (PF02878.23), PGM_PMM_II (PF02879.23), PGM_PMM_III (PF02880.23). | PGM_PMM_I PGM_PMM_II PGM_PMM_III |
Resolved |
| crcB Rv3069 |
mtbc0_003262 |
fluoride ion transporter CrcB | Fluoride efflux transporter CrcB. Pfam: CRCB (PF02537.22). | CRCB |
Resolved |
| crcB Rv3070 |
mtbc0_003263 |
fluoride ion transporter CrcB | Fluoride efflux transporter CrcB. Pfam: CRCB (PF02537.22). | CRCB |
Resolved |
| Rv3071 Rv3071 |
mtbc0_003264 |
hypothetical protein | DUF190 domain-containing protein. | DUF190 |
Family assigned |
| Rv3072c Rv3072c |
- |
hypothetical protein | Contains Bac_luciferase (PF00296.27) domain(s); putative function inferred from the domain architecture. | Bac_luciferase |
Family assigned |
| Rv3073c Rv3073c |
mtbc0_003267 |
hypothetical protein | Conserved hypothetical protein; DUF domain(s) DUF488-N3i, DUF488-N3a, DUF488. Function unknown. Foldseek best (non-significant) hit: 3ijd-assembly2_B-2 Uncharacterized protein Cthe_2304 from Clostridium (prob 0.04, TM 0.37). | DUF488-N3i DUF488-N3a DUF488 |
Still unknown |
| Rv3074 Rv3074 |
mtbc0_003268 |
hypothetical protein | HNH endonuclease / nuclease of the 13E12-repeat family (eggNOG COG1403, COG category V). RefSeq leaves it 'hypothetical protein'. HNH active-site motif; target undetermined. | DUF222 |
Family assigned |
| Rv3075c Rv3075c |
mtbc0_003269 |
hypothetical protein | CoA ester lyase. Pfam: HpcH_HpaI (PF03328.21). | HpcH_HpaI |
Resolved |
| Rv3076 Rv3076 |
mtbc0_003270 |
hypothetical protein | SRPBCC family protein. Pfam: Polyketide_cyc2 (PF10604.16), Polyketide_cyc (PF03364.26). | Polyketide_cyc2 Polyketide_cyc |
Family assigned |
| Rv3077 Rv3077 |
- |
hydrolase | Hydrolase. Pfam: Sulfatase (PF00884.29). | Sulfatase |
Resolved |
| hab Rv3078 |
mtbc0_003272 |
hydroxylaminobenzene mutase | Hydrogenase. Pfam: SOI (PF26512.2). | SOI |
Resolved |
| Rv3079c Rv3079c |
mtbc0_003273 |
hypothetical protein | LLM class F420-dependent oxidoreductase. Pfam: Bac_luciferase (PF00296.27). | Bac_luciferase |
Resolved |
| pknK Rv3080c |
mtbc0_003274 |
serine/threonine-protein kinase PknK | Serine/threonine protein kinase PknK. Pfam: Pkinase (PF00069.32), PK_Tyr_Ser-Thr (PF07714.24), NPHP3_N (PF24883.3), AAA_16 (PF13191.13), WHD_MalT (PF25873.1). | Pkinase PK_Tyr_Ser-Thr NPHP3_N AAA_16 WHD_MalT |
Resolved |
| Rv3081 Rv3081 |
mtbc0_003275 |
hypothetical protein | Nucleotidyltransferase. | DUF2204 |
Resolved |
| virS Rv3082c |
mtbc0_003276 |
HTH-type transcriptional regulator VirS | AraC family transcriptional regulator. Pfam: Arabinose_bd (PF12625.13), HTH_18 (PF12833.14), HTH_AraC (PF00165.30). | Arabinose_bd HTH_18 HTH_AraC |
Family assigned |
| Rv3083 Rv3083 |
mtbc0_003277 |
FAD-containing monooxygenase MymA | NAD(P)/FAD-dependent oxidoreductase. Pfam: Pyr_redox_2 (PF07992.21), NAD_binding_8 (PF13450.13), FMO-like (PF00743.26), Lys_Orn_oxgnase (PF13434.13). | Pyr_redox_2 NAD_binding_8 FMO-like Lys_Orn_oxgnase |
Resolved |
| lipR Rv3084 |
mtbc0_003278 |
acetyl-hydrolase LipR | Alpha/beta hydrolase. Pfam: Say1_Mug180 (PF10340.16), Abhydrolase_3 (PF07859.20). | Say1_Mug180 Abhydrolase_3 |
Family assigned |
| Rv3085 Rv3085 |
mtbc0_003279 |
oxidoreductase SadH | SDR family NAD(P)-dependent oxidoreductase. Pfam: adh_short (PF00106.32), KR (PF08659.17), adh_short_C2 (PF13561.13). | adh_short KR adh_short_C2 |
Family assigned |
| adhD Rv3086 |
mtbc0_003280 |
alcohol dehydrogenase D | NDMA-dependent alcohol dehydrogenase. Pfam: ADH_N (PF08240.18), ADH_zinc_N (PF00107.33). | ADH_N ADH_zinc_N |
Resolved |
| Rv3087 Rv3087 |
mtbc0_003281 |
diacyglycerol O-acyltransferase | Wax ester/triacylglycerol synthase family O-acyltransferase. Pfam: WS_DGAT_cat (PF03007.22), WS_DGAT_C (PF06974.19). | WS_DGAT_cat WS_DGAT_C |
Family assigned |
| tgs4 Rv3088 |
mtbc0_003282 |
diacyglycerol O-acyltransferase | Wax ester/triacylglycerol synthase family O-acyltransferase. Pfam: WS_DGAT_cat (PF03007.22), WS_DGAT_C (PF06974.19). | WS_DGAT_cat WS_DGAT_C |
Family assigned |
| fadD13 Rv3089 |
mtbc0_003283 |
long chain-fatty-acid--CoA ligase FadD13 | Long-chain-fatty-acid--CoA ligase FadD13. Pfam: AMP-binding (PF00501.35), AMP-binding_C (PF13193.13). | AMP-binding AMP-binding_C |
Resolved |
| Rv3090 Rv3090 |
mtbc0_003284 |
hypothetical protein | SPFH domain-containing protein. Pfam: Band_7 (PF01145.32). | Band_7 |
Family assigned |
| Rv3091 Rv3091 |
mtbc0_003285 |
hypothetical protein | Patatin-like phospholipase family protein. Pfam: Patatin (PF01734.28). | Patatin |
Family assigned |
| Rv3092c Rv3092c |
mtbc0_003286 |
integral membrane protein | Putative ABC-transporter component of the mxyR xylan-utilisation locus. RefSeq leaves it of unknown function. Rv3092c lies in the locus controlled by the MarR-family regulator MxyR (Rv3095), divergent from a hydrolase (rv3094c) and oxidoreductase (rv3093c) and convergent with a xylanase (rv3096); MxyR derepresses the locus in response to xylan/arabinose/galactose (Mauran 2022). Substrate unfixed. | DUF808 |
Family assigned |
| Rv3093c Rv3093c |
mtbc0_003287 |
oxidoreductase | LLM class F420-dependent oxidoreductase. Pfam: Bac_luciferase (PF00296.27). | Bac_luciferase |
Resolved |
| Rv3094c Rv3094c |
mtbc0_003288 |
hypothetical protein | Acyl-CoA dehydrogenase family protein. Pfam: Acyl-CoA_dh_N (PF02771.22), Acyl-CoA_dh_1 (PF00441.30), Acyl-CoA_dh_2 (PF08028.17). | Acyl-CoA_dh_N Acyl-CoA_dh_1 Acyl-CoA_dh_2 |
Family assigned |
| Rv3095 Rv3095 |
mtbc0_003289 |
HTH-type transcriptional regulator | Helix-turn-helix domain-containing protein. Pfam: HxlR (PF01638.24), HTH_5 (PF01022.27). | HxlR HTH_5 |
Family assigned |
| Rv3096 Rv3096 |
mtbc0_003290 |
hypothetical protein | 1%2C4-beta-xylanase. | Resolved | |
| lipY Rv3097c |
- |
triacylglycerol lipase Lip | Triacylglycerol lipase Lip. Pfam: PE (PF00934.26), Abhydrolase_3 (PF07859.20), Say1_Mug180 (PF10340.16). | PE Abhydrolase_3 Say1_Mug180 |
Resolved |
| Rv3098A Rv3098A |
- |
PemK-like protein | PemK-like protein. Pfam: PemK_toxin (PF02452.24). | PemK_toxin |
Family assigned |
| Rv3098c Rv3098c |
mtbc0_003292 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. Foldseek best (non-significant) hit: 6xr2-assembly2_E Computationally designed right-handed alpha/alpha hom (prob 0.66, TM 0.57). | Still unknown | |
| Rv3099c Rv3099c |
mtbc0_003295 |
hypothetical protein | Maleylpyruvate isomerase family mycothiol-dependent enzyme. Pfam: MDMPI_N (PF11716.14), DinB_2 (PF12867.13), MDMPI_C (PF07398.17). | MDMPI_N DinB_2 MDMPI_C |
Family assigned |
| smpB Rv3100c |
mtbc0_003296 |
SsrA-binding protein | SsrA-binding protein SmpB. Pfam: SmpB (PF01668.24). | SmpB |
Family assigned |
| ftsX Rv3101c |
mtbc0_003297 |
cell division protein FtsX | Permease-like cell division protein FtsX. Pfam: FtsX_ECD (PF18075.9), FtsX (PF02687.28). | FtsX_ECD FtsX |
Resolved |
| ftsE Rv3102c |
mtbc0_003298 |
cell division ATP-binding protein FtsE | Cell division ATP-binding protein FtsE. Pfam: ABC_tran (PF00005.34), AAA_21 (PF13304.13). | ABC_tran AAA_21 |
Family assigned |
| Rv3103c Rv3103c |
mtbc0_003299 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| Rv3104c Rv3104c |
mtbc0_003300 |
transmembrane protein | Mechanosensitive ion channel family protein. Pfam: MS_channel_1st (PF21088.3), MS_channel_2nd (PF00924.25), MS_channel_3rd (PF21082.3). | MS_channel_1st MS_channel_2nd MS_channel_3rd |
Family assigned |
| prfB Rv3105c |
- |
peptide chain release factor PrfB | Peptide chain release factor PrfB. Pfam: PCRF (PF03462.24), RF-1 (PF00472.27). | PCRF RF-1 |
Resolved |
| fprA Rv3106 |
mtbc0_003302 |
NADPH-ferredoxin reductase FprA | Ferredoxin--NADP(+) reductase FprA. Pfam: Pyr_redox_2 (PF07992.21). | Pyr_redox_2 |
Resolved |
| agpS Rv3107c |
mtbc0_003303 |
alkyldihydroxyacetonephosphate synthase | FAD-binding oxidoreductase. Pfam: FAD_binding_4 (PF01565.29), FAD-oxidase_C (PF02913.25). | FAD_binding_4 FAD-oxidase_C |
Resolved |
| Rv3108 Rv3108 |
- |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. Foldseek best (non-significant) hit: 6qc3-assembly1_B5 Ovine respiratory supercomplex I+III2 open class 1 (prob 0.02, TM 0.19). | Still unknown |