Genes
3974 genes matched.
| Gene | MTBC0 | Legacy (H37Rv) | MTBC0 PGAP / revised | Pfam | Verdict |
|---|---|---|---|---|---|
| cya Rv1625c |
mtbc0_001732 |
adenylate cyclase | Adenylate cyclase. Pfam: MASE7 (PF20967.3), Guanylate_cyc (PF00211.26). | MASE7 Guanylate_cyc |
Resolved |
| Rv1626 Rv1626 |
mtbc0_001734 |
two-component system transcriptional regulator | ANTAR domain-containing response regulator. Pfam: Response_reg (PF00072.31), ANTAR (PF03861.20). | Response_reg ANTAR |
Family assigned |
| Rv1627c Rv1627c |
mtbc0_001735 |
nonspecific lipid-transfer protein | Lipid-transfer protein. Pfam: Thiolase_N (PF00108.30), ketoacyl-synt (PF00109.33), Thiolase_C_1 (PF22691.3). | Thiolase_N ketoacyl-synt Thiolase_C_1 |
Resolved |
| Rv1628c Rv1628c |
mtbc0_001736 |
hypothetical protein | Zn-ribbon domain-containing OB-fold protein. Pfam: zf-ChsH2 (PF12172.15), OB_ChsH2_C (PF01796.24). | zf-ChsH2 OB_ChsH2_C |
Family assigned |
| polA Rv1629 |
mtbc0_001737 |
DNA polymerase I | DNA polymerase I. Pfam: 5_3_exonuc_N (PF02739.23), 5_3_exonuc (PF01367.26), DNA_polI_exo1 (PF22619.3), DNA_pol_A (PF00476.27). | 5_3_exonuc_N 5_3_exonuc DNA_polI_exo1 DNA_pol_A |
Resolved |
| rpsA Rv1630 |
mtbc0_001738 |
30S ribosomal protein S1 | 30S ribosomal protein S1. Pfam: S1 (PF00575.30), S1_RRP5 (PF23459.2). | S1 S1_RRP5 |
Resolved |
| coaE Rv1631 |
mtbc0_001739 |
dephospho-CoA kinase CoaE | Dephospho-CoA kinase. Pfam: CoaE (PF01121.27), GrpB (PF04229.21). | CoaE GrpB |
Resolved |
| Rv1632c Rv1632c |
mtbc0_001740 |
hypothetical protein | DUF402; structure of the DUF402 family (PDB 2P12, TM 0.96); putative nucleotide-binding/phosphatase fold. | DUF402 |
Family assigned |
| uvrB Rv1633 |
- |
excinuclease ABC subunit UvrB | Excinuclease ABC subunit UvrB. Pfam: ResIII (PF04851.22), DEAD (PF00270.36), UvrB_inter (PF17757.7), UvrB_3rd (PF27431.1), Helicase_C (PF00271.38), UvrB (PF12344.15), UVR (PF02151.26). | ResIII DEAD UvrB_inter UvrB_3rd Helicase_C UvrB UVR |
Family assigned |
| Rv1634 Rv1634 |
mtbc0_001742 |
multidrug-efflux transporter | MFS transporter. Pfam: MFS_1 (PF07690.22). | MFS_1 |
Resolved |
| Rv1635c Rv1635c |
mtbc0_001743 |
mannosyltransferase | Glycosyltransferase family 39 protein. | Family assigned | |
| TB15.3 Rv1636 |
mtbc0_001744 |
iron-regulated universal stress protein | Universal stress protein. Pfam: Usp (PF00582.33). | Usp |
Resolved |
| Rv1637c Rv1637c |
- |
hypothetical protein | Contains Lactamase_B (PF00753.34) domain(s); putative function inferred from the domain architecture. | Lactamase_B |
Family assigned |
| uvrA Rv1638 |
mtbc0_001746 |
excinuclease ABC subunit UvrA | Excinuclease ABC subunit UvrA. Pfam: UvrA_inter (PF17760.7), UvrA_DNA-bind (PF17755.7). | UvrA_inter UvrA_DNA-bind |
Family assigned |
| Rv1638A Rv1638A |
- |
hypothetical protein | PspA / IM30-family membrane-stress protein (eggNOG COG1842, Phage-shock-protein-A homolog that suppresses sigma54-dependent transcription), in an RD (DS6) context. Membrane-integrity stress response at family level. | Family assigned | |
| Rv1639c Rv1639c |
mtbc0_001748 |
hypothetical protein | Alpha/beta hydrolase family protein. Pfam: Esterase (PF00756.27). | Esterase |
Family assigned |
| lysX Rv1640c |
- |
bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase | Bifunctional lysine--tRNA ligase/phosphatidylglycerol lysyltransferase. Pfam: tRNA-synt_2_TM (PF16995.11), LPG_synthase_C (PF09924.16), tRNA_anti-codon (PF01336.32), tRNA-synt_2 (PF00152.26). | tRNA-synt_2_TM LPG_synthase_C tRNA_anti-codon tRNA-synt_2 |
Resolved |
| infC Rv1641 |
mtbc0_001750 |
initiation factor IF-3 | Translation initiation factor IF-3. Pfam: IF3_N (PF05198.22), IF3_C (PF00707.28). | IF3_N IF3_C |
Resolved |
| rpmI Rv1642 |
- |
50S ribosomal protein L35 | 50S ribosomal protein L35. Pfam: Ribosomal_L35p (PF01632.25). | Ribosomal_L35p |
Resolved |
| rplT Rv1643 |
mtbc0_001752 |
50S ribosomal protein L20 | 50S ribosomal protein L20. Pfam: Ribosomal_L20 (PF00453.24). | Ribosomal_L20 |
Resolved |
| tsnR Rv1644 |
mtbc0_001753 |
23S rRNA methyltransferase TsnR | RNA methyltransferase. Pfam: MRM3-like_sub_bind (PF22435.2), SpoU_sub_bind (PF08032.18), SpoU_methylase (PF00588.25). | MRM3-like_sub_bind SpoU_sub_bind SpoU_methylase |
Resolved |
| Rv1645c Rv1645c |
mtbc0_001754 |
hypothetical protein | Oxygenase MpaB family protein. Pfam: MPAB_Lcp_cat (PF09995.16). | MPAB_Lcp_cat |
Family assigned |
| PE17 Rv1646 |
- |
PE family protein PE17 | PE family protein PE17. Pfam: PE (PF00934.26). | PE |
Family assigned |
| Rv1647 Rv1647 |
- |
adenylate cyclase | Adenylate cyclase. Pfam: Guanylate_cyc (PF00211.26). | Guanylate_cyc |
Resolved |
| Rv1648 Rv1648 |
mtbc0_001757 |
transmembrane protein | Rhomboid-like protein. Pfam: Rhomboid_2 (PF20401.4). | Rhomboid_2 |
Family assigned |
| pheS Rv1649 |
- |
phenylalanine--tRNA ligase subunit alpha | Phenylalanine--tRNA ligase subunit alpha. Pfam: Phe_tRNA-synt_N (PF02912.24), tRNA-synt_2d (PF01409.26). | Phe_tRNA-synt_N tRNA-synt_2d |
Family assigned |
| pheT Rv1650 |
mtbc0_001759 |
phenylalanine--tRNA ligase subunit beta | Phenylalanine--tRNA ligase subunit beta. Pfam: tRNA_bind (PF01588.27), B3_4 (PF03483.23), B5 (PF03484.22), tRNA_synthFbeta (PF17759.7), FDX-ACB (PF03147.20). | tRNA_bind B3_4 B5 tRNA_synthFbeta FDX-ACB |
Family assigned |
| PE_PGRS30 Rv1651c |
- |
PE-PGRS family protein PE_PGRS30 | PE-PGRS family protein PE_PGRS30. Pfam: PE (PF00934.26). | PE |
Family assigned |
| argC Rv1652 |
mtbc0_001761 |
N-acetyl-gamma-glutamyl-phoshate reductase | N-acetyl-gamma-glutamyl-phosphate reductase. Pfam: Semialdhyde_dh (PF01118.31), Semialdhyde_dhC_1 (PF22698.2), Semialdhyde_dhC (PF02774.24). | Semialdhyde_dh Semialdhyde_dhC_1 Semialdhyde_dhC |
Resolved |
| argJ Rv1653 |
mtbc0_001762 |
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase | Bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ. Pfam: ArgJ (PF01960.24). | ArgJ |
Resolved |
| argB Rv1654 |
mtbc0_001763 |
acetylglutamate kinase | Acetylglutamate kinase. Pfam: AA_kinase (PF00696.34). | AA_kinase |
Resolved |
| argD Rv1655 |
mtbc0_001764 |
acetylornithine aminotransferase | Acetylornithine transaminase. Pfam: Aminotran_3 (PF00202.28), Aminotran_1_2 (PF00155.28). | Aminotran_3 Aminotran_1_2 |
Resolved |
| argF Rv1656 |
mtbc0_001765 |
ornithine carbamoyltransferase | Ornithine carbamoyltransferase. Pfam: OTCace_N (PF02729.27), OTCace (PF00185.31). | OTCace_N OTCace |
Resolved |
| argR Rv1657 |
mtbc0_001766 |
arginine repressor | Arginine repressor. Pfam: Arg_repressor (PF01316.28), Arg_repressor_C (PF02863.24). | Arg_repressor Arg_repressor_C |
Resolved |
| argG Rv1658 |
mtbc0_001767 |
argininosuccinate synthase | Argininosuccinate synthase. Pfam: Arginosuc_synth (PF00764.26), Arginosuc_syn_C (PF20979.3). | Arginosuc_synth Arginosuc_syn_C |
Resolved |
| argH Rv1659 |
mtbc0_001768 |
argininosuccinate lyase | Argininosuccinate lyase. Pfam: Lyase_1 (PF00206.26), ASL_C2 (PF14698.12). | Lyase_1 ASL_C2 |
Resolved |
| pks10 Rv1660 |
mtbc0_001769 |
chalcone synthase | Type III polyketide synthase. Pfam: Chal_sti_synt_N (PF00195.26), FAE1_CUT1_RppA (PF08392.19), Chal_sti_synt_C (PF02797.22), ACP_syn_III_C (PF08541.17). | Chal_sti_synt_N FAE1_CUT1_RppA Chal_sti_synt_C ACP_syn_III_C |
Resolved |
| pks7 Rv1661 |
mtbc0_001770 |
polyketide synthase | Type I polyketide synthase. Pfam: Docking (PF08990.17), ketoacyl-synt (PF00109.33), Ketoacyl-synt_C (PF02801.29), KAsynt_C_assoc (PF16197.12), CurL-like_PKS_C (PF22621.3), Acyl_transf_1 (PF00698.27), PKS_DH_N (PF21089.4), PS-DH (PF14765.13), SpnB_Rossmann (PF22953.4), ADH_N (PF08240.18), ADH_zinc_N (PF00107.33), ADH_zinc_N_2 (PF13602.13), KR (PF08659.17), adh_short (PF00106.32), Epimerase (PF01370.28), PP-binding (PF00550.32). | Docking ketoacyl-synt Ketoacyl-synt_C KAsynt_C_assoc CurL-like_PKS_C Acyl_transf_1 PKS_DH_N PS-DH SpnB_Rossmann ADH_N ADH_zinc_N ADH_zinc_N_2 KR adh_short Epimerase PP-binding |
Resolved |
| pks8 Rv1662 |
- |
polyketide synthase | Polyketide synthase. Pfam: Docking (PF08990.17), ketoacyl-synt (PF00109.33), Thiolase_N (PF00108.30), Ketoacyl-synt_C (PF02801.29), KAsynt_C_assoc (PF16197.12), CurL-like_PKS_C (PF22621.3), RhiE-like_linker (PF22336.3), Acyl_transf_1 (PF00698.27), PKS_DH_N (PF21089.4), PS-DH (PF14765.13), SpnB_Rossmann (PF22953.4), ADH_N (PF08240.18), ADH_zinc_N (PF00107.33), ADH_zinc_N_2 (PF13602.13). | Docking ketoacyl-synt Thiolase_N Ketoacyl-synt_C KAsynt_C_assoc CurL-like_PKS_C RhiE-like_linker Acyl_transf_1 PKS_DH_N PS-DH SpnB_Rossmann ADH_N ADH_zinc_N ADH_zinc_N_2 |
Resolved |
| pks17 Rv1663 |
- |
polyketide synthase | Polyketide synthase. Pfam: KR (PF08659.17), adh_short (PF00106.32), Epimerase (PF01370.28), Polysacc_synt_2 (PF02719.22), GDP_Man_Dehyd (PF16363.12), 3Beta_HSD (PF01073.26), adh_short_C2 (PF13561.13), PP-binding (PF00550.32). | KR adh_short Epimerase Polysacc_synt_2 GDP_Man_Dehyd 3Beta_HSD adh_short_C2 PP-binding |
Resolved |
| pks9 Rv1664 |
mtbc0_001772 |
polyketide synthase | Type I polyketide synthase. Pfam: ketoacyl-synt (PF00109.33), Ketoacyl-synt_C (PF02801.29), KAsynt_C_assoc (PF16197.12), CurL-like_PKS_C (PF22621.3), Acyl_transf_1 (PF00698.27), PP-binding (PF00550.32). | ketoacyl-synt Ketoacyl-synt_C KAsynt_C_assoc CurL-like_PKS_C Acyl_transf_1 PP-binding |
Resolved |
| pks11 Rv1665 |
mtbc0_001773 |
chalcone synthase | Type III polyketide synthase. Pfam: Chal_sti_synt_N (PF00195.26), FAE1_CUT1_RppA (PF08392.19), Chal_sti_synt_C (PF02797.22), ACP_syn_III_C (PF08541.17). | Chal_sti_synt_N FAE1_CUT1_RppA Chal_sti_synt_C ACP_syn_III_C |
Resolved |
| cyp139 Rv1666c |
mtbc0_001774 |
cytochrome P450 Cyp139 | Cytochrome P450. Pfam: p450 (PF00067.28). | p450 |
Resolved |
| Rv1667c Rv1667c |
|
Probable second part of macrolide-transport ATP-binding protein ABC transporter | Thought to be involved in active transport of macrolide across the membrane (export). Macrolide antibiotics resistance by an export mechanism. Responsible for energy coupling to the transport system. | ABC_tran ABC_tran_CTD |
Family assigned |
| Rv1668c Rv1668c |
|
Probable first part of macrolide-transport ATP-binding protein ABC transporter | Thought to be involved in active transport of macrolide across the membrane (export). Macrolide antibiotics resistance by an export mechanism. Responsible for energy coupling to the transport system. | ABC_tran ABC_tran_Xtn |
Family assigned |
| Rv1669 Rv1669 |
mtbc0_001776 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. Foldseek best (non-significant) hit: 3jsy-assembly2_B N-terminal fragment of ribosomal protein L10 from Met (prob 0.10, TM 0.55). | Still unknown | |
| Rv1670 Rv1670 |
mtbc0_001777 |
hypothetical protein | DUF427 domain-containing protein. Pfam: NTP_transf_9 (PF04248.20). | NTP_transf_9 |
Family assigned |
| Rv1671 Rv1671 |
mtbc0_001778 |
membrane protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| Rv1672c Rv1672c |
mtbc0_001779 |
integral membrane transport protein | MFS transporter. Pfam: MFS_1 (PF07690.22). | MFS_1 |
Resolved |
| Rv1673c Rv1673c |
mtbc0_001780 |
hypothetical protein | Transglutaminase family protein. Pfam: Transglut_core (PF01841.26). | Transglut_core |
Family assigned |