Genes
3906 genes matched.
| Gene | MTBC0 | Legacy (H37Rv) | MTBC0 PGAP / revised | Pfam | Verdict |
|---|---|---|---|---|---|
| Rv0245 Rv0245 |
mtbc0_000261 |
oxidoreductase | Flavin reductase family protein. Pfam: Flavin_Reduct (PF01613.25). | Flavin_Reduct |
Family assigned |
| Rv0246 Rv0246 |
mtbc0_000262 |
integral membrane protein | Integral membrane protein. | Family assigned | |
| Rv0247c Rv0247c |
mtbc0_000263 |
succinate dehydrogenase iron-sulfur subunit | Succinate dehydrogenase/fumarate reductase iron-sulfur subunit. Pfam: Fer2_3 (PF13085.12), Fer2 (PF00111.33), Fer4_8 (PF13183.12). | Fer2_3 Fer2 Fer4_8 |
Family assigned |
| Rv0248c Rv0248c |
mtbc0_000264 |
succinate dehydrogenase flavoprotein subunit | Fumarate reductase/succinate dehydrogenase flavoprotein subunit. Pfam: FAD_binding_2 (PF00890.31), Succ_DH_flav_C (PF02910.26). | FAD_binding_2 Succ_DH_flav_C |
Family assigned |
| Rv0249c Rv0249c |
mtbc0_000265 |
succinate dehydrogenase membrane anchor subunit | Succinate dehydrogenase membrane anchor subunit. | Family assigned | |
| Rv0250c Rv0250c |
mtbc0_000266 |
hypothetical protein | No Pfam domain above threshold, but Foldseek strongly matches a sensor / HD-domain fold (CpxA-like, prob 0.95, TM=0.88): a putative signal-transduction / sensor-associated module. Structure-based. | Family assigned | |
| hsp Rv0251c |
mtbc0_000267 |
heat shock protein | Stress-responsive chaperone Acr2. Pfam: HSP20 (PF00011.28). | HSP20 |
Resolved |
| nirB Rv0252 |
mtbc0_000268 |
nitrite reductase large subunit NirB | Nitrite reductase large subunit NirB. Pfam: Pyr_redox_2 (PF07992.21), Pyr_redox (PF00070.34), Rubredoxin_C (PF18267.8), Fer2_BFD (PF04324.21), NIR_SIR_ferr (PF03460.23), NIR_SIR (PF01077.28). | Pyr_redox_2 Pyr_redox Rubredoxin_C Fer2_BFD NIR_SIR_ferr NIR_SIR |
Family assigned |
| nirD Rv0253 |
mtbc0_000269 |
nitrite reductase small subunit NirD | Nitrite reductase small subunit NirD. Pfam: Rieske_2 (PF13806.13). | Rieske_2 |
Family assigned |
| cobU Rv0254c |
mtbc0_000270 |
bifunctional cobinamide kinase/cobinamide phosphate guanylyltransferase | Bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase. Pfam: CobU (PF02283.23). | CobU |
Resolved |
| cobQ1 Rv0255c |
- |
cobyric acid synthase | Cobyric acid synthase. Pfam: AAA_26 (PF13500.13), CbiA (PF01656.30), GATase_3 (PF07685.21). | AAA_26 CbiA GATase_3 |
Resolved |
| PPE2 Rv0256c |
- |
PPE family protein PPE2 | PPE family protein PPE2. Pfam: PPE (PF00823.26), PPE-PPW (PF18878.6). | PPE PPE-PPW |
Family assigned |
| Rv0257 Rv0257 |
- |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| Rv0258c Rv0258c |
mtbc0_000274 |
hypothetical protein | TetR/AcrR-family transcriptional regulator (Pfam TetR_C_16 PF17920). PGAP left it 'hypothetical', but the TetR C-terminal ligand-binding/regulatory domain identifies it as a one-component transcriptional regulator. | TetR_C_16 |
Resolved |
| Rv0259c Rv0259c |
mtbc0_000275 |
hypothetical protein | Sirohydrochlorin chelatase (CbiX family, Pfam CbiX PF01903): inserts cobalt or ferrous iron into sirohydrochlorin during siroheme / cobalamin (vitamin B12) cofactor biosynthesis. | CbiX |
Family assigned |
| Rv0260c Rv0260c |
mtbc0_000276 |
transcriptional regulator | Uroporphyrinogen-III synthase. Pfam: HEM4 (PF02602.21), Trans_reg_C (PF00486.35). | HEM4 Trans_reg_C |
Resolved |
| narK3 Rv0261c |
mtbc0_000277 |
nitrate/nitrite transporter | Nitrate/nitrite transporter. Pfam: MFS_1 (PF07690.22). | MFS_1 |
Resolved |
| aac Rv0262c |
- |
aminoglycoside 2'-N-acetyltransferase | Aminoglycoside 2'-N-acetyltransferase. Pfam: Acetyltransf_9 (PF13527.14), Acetyltransf_1 (PF00583.32), Acetyltransf_10 (PF13673.14). | Acetyltransf_9 Acetyltransf_1 Acetyltransf_10 |
Resolved |
| Rv0263c Rv0263c |
mtbc0_000279 |
hypothetical protein | Carboxyltransferase / 5-oxoprolinase (A/B) subunit (Pfam CT_A_B PF02626; PGAP 5-oxoprolinase/urea-amidolyase family). Putative ATP-dependent amide-bond-hydrolysing subunit, partnering Rv0264c. | CT_A_B |
Family assigned |
| Rv0264c Rv0264c |
mtbc0_000280 |
hypothetical protein | Allophanate hydrolase / 5-oxoprolinase (C/D) subunit (Pfam CT_C_D PF02682). With Rv0263c forms a urea-amidolyase / 5-oxoprolinase-type complex that hydrolyses amide bonds (e.g. allophanate or 5-oxoproline). | CT_C_D |
Family assigned |
| Rv0265c Rv0265c |
- |
iron ABC transporter substrate-binding lipoprotein | Iron ABC transporter substrate-binding lipoprotein. Pfam: Peripla_BP_2 (PF01497.24). | Peripla_BP_2 |
Family assigned |
| oplA Rv0266c |
mtbc0_000282 |
5-oxoprolinase OplA | Hydantoinase B/oxoprolinase family protein. Pfam: Hydant_A_N (PF05378.20), Hydantoinase_A (PF01968.25), Hydant_A_C (PF19278.5), Hydantoinase_B (PF02538.20). | Hydant_A_N Hydantoinase_A Hydant_A_C Hydantoinase_B |
Family assigned |
| narU Rv0267 |
mtbc0_000283 |
nitrite extrusion protein NarU | NarK family nitrate/nitrite MFS transporter. Pfam: MFS_1 (PF07690.22). | MFS_1 |
Family assigned |
| Rv0268c Rv0268c |
- |
hypothetical protein | Contains PhdYeFM_antitox (PF02604.27) domain(s); putative function inferred from the domain architecture. | PhdYeFM_antitox |
Family assigned |
| Rv0269c Rv0269c |
mtbc0_000286 |
hypothetical protein | LigD-type primase-polymerase (Pfam LigD_Prim-Pol PF21686 + DNA_primase_S PF01896): the polymerase/primase (PolDom) module of the bacterial non-homologous end-joining (NHEJ) DNA double-strand-break repair pathway. | LigD_Prim-Pol DNA_primase_S |
Resolved |
| fadD2 Rv0270 |
mtbc0_000287 |
fatty-acid--CoA ligase FadD2 | Long-chain-fatty-acid--CoA ligase FadD2. Pfam: AMP-binding (PF00501.35), AMP-binding_C (PF13193.13). | AMP-binding AMP-binding_C |
Resolved |
| fadE6 Rv0271c |
mtbc0_000288 |
acyl-CoA dehydrogenase FadE6 | Acyl-CoA dehydrogenase family protein. Pfam: Acyl-CoA_dh_N (PF02771.22), Acyl-CoA_dh_1 (PF00441.30), Acyl-CoA_dh_2 (PF08028.17), Acyl-CoA_dh_M (PF02770.25). | Acyl-CoA_dh_N Acyl-CoA_dh_1 Acyl-CoA_dh_2 Acyl-CoA_dh_M |
Family assigned |
| Rv0272c Rv0272c |
mtbc0_000289 |
hypothetical protein | Alpha/beta-hydrolase-fold enzyme (PGAP; Foldseek significant match to a cold-adapted esterase fold, E=7e-6, TM=0.65). Putative esterase/hydrolase; specific substrate not established. | Family assigned | |
| Rv0273c Rv0273c |
mtbc0_000290 |
transcriptional regulator | TetR/AcrR family transcriptional regulator. Pfam: TetR_N (PF00440.30). | TetR_N |
Family assigned |
| Rv0274 Rv0274 |
mtbc0_000291 |
hypothetical protein | VOC (vicinal-oxygen-chelate) / glyoxalase-bleomycin-resistance superfamily protein (Pfam Glyoxalase PF00903). Putative metalloenzyme (glyoxalase / dioxygenase-type chemistry); specific substrate not established. | Glyoxalase Glyoxalase_4 |
Family assigned |
| Rv0275c Rv0275c |
- |
transcriptional regulator | Transcriptional regulator. | Family assigned | |
| Rv0276 Rv0276 |
mtbc0_000293 |
hypothetical protein | Oxygenase MpaB family protein. Pfam: MPAB_Lcp_cat (PF09995.16). | MPAB_Lcp_cat |
Family assigned |
| vapC25 Rv0277c |
mtbc0_000294 |
ribonuclease VapC25 | Type II toxin-antitoxin system VapC family toxin. Pfam: PIN (PF01850.28). | PIN |
Family assigned |
| Rv0278c Rv0278c |
- |
PE-PGRS family protein PE_PGRS3 | PE-PGRS family protein PE_PGRS3. Pfam: PE (PF00934.26). | PE |
Family assigned |
| PE_PGRS4 Rv0279c |
- |
PE-PGRS family protein PE_PGRS4 | PE-PGRS family protein PE_PGRS4. Pfam: PE (PF00934.26). | PE |
Family assigned |
| PPE3 Rv0280 |
- |
PPE family protein PPE3 | PPE family protein PPE3. Pfam: PPE (PF00823.26), PPE-PPW (PF18878.6). | PPE PPE-PPW |
Family assigned |
| Rv0281 Rv0281 |
mtbc0_000300 |
S-adenosylmethionine-dependent methyltransferase | Class I SAM-dependent methyltransferase. Pfam: LCM (PF04072.21). | LCM |
Resolved |
| eccA3 Rv0282 |
- |
ESX-3 secretion system protein EccA | ESX-3 secretion system protein EccA. Pfam: T7SS_EccA1_N (PF21545.4), Mg_chelatase (PF01078.28), AAA (PF00004.36), AAA_lid_6 (PF17866.9). | T7SS_EccA1_N Mg_chelatase AAA AAA_lid_6 |
Resolved |
| eccB3 Rv0283 |
mtbc0_000302 |
ESX-3 secretion system protein EccB3 | Type VII secretion system ESX-3 subunit EccB3. Pfam: T7SS_ESX1_EccB (PF05108.19). | T7SS_ESX1_EccB |
Family assigned |
| eccC3 Rv0284 |
mtbc0_000303 |
ESX-3 secretion system protein EccC3 | Type VII secretion system ESX-3 FtsK/SpoIIIE family ATPase EccC3. Pfam: FtsK_SpoIIIE (PF01580.25). | FtsK_SpoIIIE |
Family assigned |
| PE5 Rv0285 |
- |
PE family protein PE5 | PE family protein PE5. Pfam: PE (PF00934.26). | PE |
Family assigned |
| PPE4 Rv0286 |
- |
PPE family protein PPE4 | PPE family protein PPE4. Pfam: PPE (PF00823.26), PPE-PPW (PF18878.6). | PPE PPE-PPW |
Family assigned |
| esxG Rv0287 |
mtbc0_000306 |
ESAT-6 like protein EsxG | Type VII secretion system protein EsxG. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| esxH Rv0288 |
mtbc0_000307 |
ESAT-6-like protein EsxH | Type VII secretion system effector EsxH. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| espG3 Rv0289 |
mtbc0_000308 |
ESX-3 secretion-associated protein EspG3 | Type VII secretion system ESX-3 associated protein EspG3. Pfam: ESX-1_EspG (PF14011.12). | ESX-1_EspG |
Resolved |
| eccD3 Rv0290 |
mtbc0_000309 |
ESX-3 secretion system protein EccD | Type VII secretion system ESX-3 subunit EccD3. Pfam: YukD (PF08817.17), EccD (PF19053.7). | YukD EccD |
Family assigned |
| mycP3 Rv0291 |
mtbc0_000310 |
membrane-anchored mycosin MycP | Type VII secretion system ESX-3 serine protease mycosin MycP3. Pfam: Peptidase_S8 (PF00082.28). | Peptidase_S8 |
Resolved |
| eccE3 Rv0292 |
mtbc0_000311 |
ESX-3 secretion system protein EccE | Type VII secretion system ESX-3 subunit EccE3. Pfam: EccE (PF11203.14). | EccE |
Family assigned |
| Rv0293c Rv0293c |
mtbc0_000312 |
hypothetical protein | Alpha/beta fold hydrolase. Pfam: Abhydrolase_1 (PF00561.27). | Abhydrolase_1 |
Resolved |
| tam Rv0294 |
mtbc0_000313 |
trans-aconitate methyltransferase | Trans-aconitate 2-methyltransferase. Pfam: Methyltransf_23 (PF13489.13), FtsJ (PF01728.26), MTS (PF05175.21), Methyltransf_31 (PF13847.13), Methyltransf_25 (PF13649.13), Methyltransf_11 (PF08241.19), Methyltransf_12 (PF08242.19). | Methyltransf_23 FtsJ MTS Methyltransf_31 Methyltransf_25 Methyltransf_11 Methyltransf_12 |
Resolved |