Genes
3906 genes matched.
| Gene | MTBC0 | Legacy (H37Rv) | MTBC0 PGAP / revised | Pfam | Verdict |
|---|---|---|---|---|---|
| eccB1 Rv3869 |
mtbc0_004102 |
ESX-1 secretion system protein EccB | Type VII secretion system ESX-1 subunit EccB1. Pfam: T7SS_ESX1_EccB (PF05108.19). | T7SS_ESX1_EccB |
Family assigned |
| eccCa1 Rv3870 |
mtbc0_004103 |
ESX-1 secretion system protein EccCa | Type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCa1. Pfam: FtsK_SpoIIIE (PF01580.25). | FtsK_SpoIIIE |
Family assigned |
| eccCb1 Rv3871 |
mtbc0_004104 |
ESX-1 secretion system protein EccCb | Type VII secretion system ESX-1 FtsK/SpoIIIE family ATPase EccCb1. Pfam: FtsK_SpoIIIE (PF01580.25). | FtsK_SpoIIIE |
Family assigned |
| PE35 Rv3872 |
- |
PE family protein PE35 | PE family protein PE35. Pfam: PE (PF00934.26). | PE |
Family assigned |
| PPE68 Rv3873 |
- |
PPE family protein PPE68 | PPE family protein PPE68. Pfam: PPE (PF00823.26). | PPE |
Family assigned |
| esxB Rv3874 |
mtbc0_004107 |
ESAT-6-like protein EsxB | Type VII secretion system ESX-1 WXG100 family target CFP-10. Pfam: T7SS_ESX_EspC (PF10824.15), WXG100 (PF06013.19). | T7SS_ESX_EspC WXG100 |
Family assigned |
| esxA Rv3875 |
- |
ESAT-6 protein EsxA | ESAT-6 protein EsxA. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| espI Rv3876 |
mtbc0_004110 |
ESX-1 secretion-associated protein EspI | MinD/ParA family protein. Pfam: CbiA (PF01656.30), AAA_31 (PF13614.13), ArsA_ATPase (PF02374.22). | CbiA AAA_31 ArsA_ATPase |
Family assigned |
| eccD1 Rv3877 |
mtbc0_004111 |
ESX-1 secretion system protein EccD1 | Type VII secretion system ESX-1 subunit EccD1. Pfam: YukD (PF08817.17), EccD (PF19053.7). | YukD EccD |
Family assigned |
| espJ Rv3878 |
mtbc0_004112 |
ESX-1 secretion-associated protein EspJ | Type VII secretion system ESX-1 associated protein EspJ. | Resolved | |
| espK Rv3879c |
- |
ESX-1 secretion-associated protein EspK | ESX-1 secretion-associated protein EspK. Pfam: EspK_C (PF27215.1). | EspK_C |
Family assigned |
| espL Rv3880c |
mtbc0_004114 |
ESX-1 secretion-associated protein EspL | Type VII secretion system ESX-1 associated protein EspL. Pfam: YbaB_DNA_bd (PF02575.22). | YbaB_DNA_bd |
Resolved |
| espB Rv3881c |
mtbc0_004115 |
ESX-1 secretion-associated protein EspB | Type VII secretion system ESX-1 target EspB. Pfam: EspB_PE (PF18625.8), EspB_PPE (PF21856.3). | EspB_PE EspB_PPE |
Resolved |
| eccE1 Rv3882c |
mtbc0_004116 |
ESX-1 secretion system protein EccE1 | Type VII secretion system ESX-1 subunit EccE1. Pfam: EccE (PF11203.14). | EccE |
Family assigned |
| mycP1 Rv3883c |
mtbc0_004117 |
membrane-anchored mycosin | Type VII secretion system ESX-1 serine protease mycosin MycP1. Pfam: Peptidase_S8 (PF00082.28). | Peptidase_S8 |
Resolved |
| eccA2 Rv3884c |
mtbc0_004118 |
ESX-2 secretion system protein EccA | Type VII secretion system ESX-2 AAA family ATPase EccA2. Pfam: T7SS_EccA1_N (PF21545.4), AAA (PF00004.36), AAA_lid_6 (PF17866.9). | T7SS_EccA1_N AAA AAA_lid_6 |
Family assigned |
| eccE2 Rv3885c |
mtbc0_004119 |
ESX-2 secretion system protein EccE | Type VII secretion system ESX-2 subunit EccE2. Pfam: EccE (PF11203.14). | EccE |
Family assigned |
| mycP2 Rv3886c |
mtbc0_004120 |
membrane-anchored mycosin | Type VII secretion system ESX-2 serine protease mycosin MycP2. Pfam: Peptidase_S8 (PF00082.28). | Peptidase_S8 |
Resolved |
| eccD2 Rv3887c |
mtbc0_004121 |
ESX-2 secretion system protein EccD | Type VII secretion system ESX-2 subunit EccD2. Pfam: YukD (PF08817.17), EccD (PF19053.7). | YukD EccD |
Family assigned |
| Rv3888c Rv3888c |
mtbc0_004122 |
membrane protein | MinD/ParA family protein. | Family assigned | |
| espG2 Rv3889c |
mtbc0_004123 |
ESX-2 secretion-associated protein EspG2 | Type VII secretion system ESX-2 associated protein EspG2. Pfam: ESX-1_EspG (PF14011.12). | ESX-1_EspG |
Resolved |
| esxC Rv3890c |
mtbc0_004124 |
ESAT-6 like protein EsxC | WXG100 family type VII secretion target. Pfam: WXG100 (PF06013.19). | WXG100 |
Family assigned |
| esxD Rv3891c |
mtbc0_004125 |
ESAT-6 like protein EsxD | WXG100 family type VII secretion target. Pfam: WXG100 (PF06013.19). | WXG100 |
Family assigned |
| PPE69 Rv3892c |
- |
PPE family protein PPE69 | PPE family protein PPE69. Pfam: PPE (PF00823.26). | PPE |
Family assigned |
| PE36 Rv3893c |
- |
PE family protein PE36 | PE family protein PE36. Pfam: PE (PF00934.26). | PE |
Family assigned |
| eccC2 Rv3894c |
mtbc0_004128 |
ESX-2 type VII secretion system protein EccC | Type VII secretion system ESX-2 FtsK/SpoIIIE family ATPase EccC2. Pfam: FtsK_SpoIIIE (PF01580.25). | FtsK_SpoIIIE |
Family assigned |
| eccB2 Rv3895c |
mtbc0_004129 |
ESX-2 secretion system protein EccB | Type VII secretion system ESX-2 subunit EccB2. Pfam: T7SS_ESX1_EccB (PF05108.19). | T7SS_ESX1_EccB |
Family assigned |
| Rv3896c Rv3896c |
mtbc0_004130 |
hypothetical protein | Transglycosylase. | Resolved | |
| Rv3897c Rv3897c |
- |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| Rv3898c Rv3898c |
mtbc0_004131 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. Foldseek best (non-significant) hit: 5sva-assembly1_T Mediator-RNA Polymerase II Pre-Initiation Complex (prob 0.38, TM 0.59). | Still unknown | |
| Rv3899c Rv3899c |
- |
hypothetical protein | Secreted protein (found in culture filtrate), conserved across mycobacteria, with an X-ray crystal structure of fragment 184-410 that defines a new protein family (an alpha/beta/alpha sandwich + alpha-helix bundle; no structures for homologues previously known). Immunoglobulin-like, candidate vaccine antigen. Molecular function unknown. (UniProt auto-name 'Tat' is a database artefact and is not adopted.) | DUF5632 DUF5631 |
Family assigned |
| Rv3900c Rv3900c |
mtbc0_004133 |
hypothetical protein | ESAT-6-like (WXG100) / ESX-PE-PPE superfamily protein associated with the Type VII (ESX) secretion system (four-helical-bundle, WXG motif) RefSeq leaves this locus uncharacterised. | Family assigned | |
| Rv3901c Rv3901c |
mtbc0_004134 |
membrane protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| ift Rv3902c |
mtbc0_004136 |
hypothetical protein | Necrotizing toxin immunity factor IFT. Pfam: Imm61 (PF15598.12). | Imm61 |
Resolved |
| cpnT Rv3903c |
mtbc0_004137 |
hypothetical protein | Outer membrane channel protein/necrotizing toxin glycohydrolase CpnT. Pfam: WXG100_2 (PF25547.2), TNT (PF14021.13). | WXG100_2 TNT |
Resolved |
| esxE Rv3904c |
- |
ESAT-6 like protein EsxE | ESAT-6 like protein EsxE. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| esxF Rv3905c |
mtbc0_004139 |
ESAT-6 like protein EsxF | Pore-forming CpnT exporter EsxF. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| Rv3906c Rv3906c |
mtbc0_004140 |
hypothetical protein | Pullulanase. | Resolved | |
| pcnA Rv3907c |
- |
poly(A) polymerase PcnA | Poly(A) polymerase PcnA. Pfam: PolyA_pol (PF01743.27), PolyA_pol_RNAbd (PF12627.13), HD (PF01966.29). | PolyA_pol PolyA_pol_RNAbd HD |
Resolved |
| mutT4 Rv3908 |
mtbc0_004142 |
mutator protein MutT | NUDIX hydrolase. Pfam: NUDIX (PF00293.35). | NUDIX |
Resolved |
| Rv3909 Rv3909 |
mtbc0_004143 |
hypothetical protein | Conserved hypothetical protein; DUF domain(s) DUF6049. Function unknown. | DUF6049 |
Still unknown |
| murJ Rv3910 |
mtbc0_004144 |
peptidoglycan biosynthesis protein | Murein biosynthesis integral membrane protein MurJ. Pfam: MurJ (PF03023.20). | MurJ |
Resolved |
| sigM Rv3911 |
- |
ECF RNA polymerase sigma factor SigM | ECF RNA polymerase sigma factor SigM. Pfam: Sigma70_r2 (PF04542.21). | Sigma70_r2 |
Resolved |
| rsmA Rv3912 |
mtbc0_004146 |
anti-sigma-M factor RsmA | Anti-sigma-M factor RsmA. Pfam: RsmA_C (PF27063.1). | RsmA_C |
Resolved |
| trxB2 Rv3913 |
mtbc0_004147 |
thioredoxin reductase | Thioredoxin-disulfide reductase. Pfam: Pyr_redox_2 (PF07992.21), FAD_binding_2 (PF00890.31), Pyr_redox_3 (PF13738.13), Pyr_redox (PF00070.34). | Pyr_redox_2 FAD_binding_2 Pyr_redox_3 Pyr_redox |
Resolved |
| trxC Rv3914 |
mtbc0_004148 |
thioredoxin TrxC | Thioredoxin. Pfam: Thioredoxin (PF00085.27), Thioredoxin_2 (PF13098.14), Thioredoxin_9 (PF14595.13), KaiB (PF07689.19). | Thioredoxin Thioredoxin_2 Thioredoxin_9 KaiB |
Resolved |
| Rv3915 Rv3915 |
- |
peptidoglycan hydrolase | Peptidoglycan hydrolase. Pfam: PG_binding_1 (PF01471.24), Amidase_3 (PF01520.24). | PG_binding_1 Amidase_3 |
Resolved |
| Rv3916c Rv3916c |
mtbc0_004150 |
hypothetical protein | Acetyltransferase. | Resolved | |
| parB Rv3917c |
mtbc0_004151 |
chromosome partitioning protein ParB | ParB/RepB/Spo0J family partition protein. Pfam: ParB_N (PF02195.27), HTH_ParB (PF17762.9), ParB_C (PF23552.3). | ParB_N HTH_ParB ParB_C |
Family assigned |
| parA Rv3918c |
mtbc0_004152 |
chromosome partitioning protein ParA | Chromosome partitioning protein ParA. Pfam: ParA (PF10609.16), AAA_31 (PF13614.13), MipZ (PF09140.18), CbiA (PF01656.30), ArsA_ATPase (PF02374.22). | ParA AAA_31 MipZ CbiA ArsA_ATPase |
Resolved |