Genes
3906 genes matched.
| Gene | MTBC0 | Legacy (H37Rv) | MTBC0 PGAP / revised | Pfam | Verdict |
|---|---|---|---|---|---|
| Rv1156 Rv1156 |
mtbc0_001243 |
hypothetical protein | HhH-GPD-type base excision DNA repair protein. Pfam: HhH-GPD (PF00730.32). | HhH-GPD |
Resolved |
| Rv1157c Rv1157c |
mtbc0_001245 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. Foldseek best (non-significant) hit: 8glv-assembly1_Gs 96-nm repeat unit of doublet microtubules from Chlam (prob 0.04, TM 0.08). | Still unknown | |
| Rv1158c Rv1158c |
mtbc0_001246 |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown | |
| pimE Rv1159 |
mtbc0_001247 |
polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase | Mannosyltransferase. Pfam: GT87 (PF09594.17). | GT87 |
Resolved |
| Rv1159A Rv1159A |
- |
4a-hydroxytetrahydrobiopterin dehydratase | 4a-hydroxytetrahydrobiopterin dehydratase. Pfam: Pterin_4a (PF01329.25). | Pterin_4a |
Resolved |
| mutT2 Rv1160 |
mtbc0_001249 |
8-oxo-dGTP diphosphatase | 8-oxo-dGTP diphosphatase MutT. Pfam: NUDIX (PF00293.35). | NUDIX |
Resolved |
| narG Rv1161 |
mtbc0_001250 |
nitrate reductase subunit alpha | Nitrate reductase subunit alpha. Pfam: Molybdopterin (PF00384.28), NarG_dom_V (PF28599.1), Molydop_binding (PF01568.28). | Molybdopterin NarG_dom_V Molydop_binding |
Family assigned |
| narH Rv1162 |
- |
nitrate reductase subunit beta | Nitrate reductase subunit beta. Pfam: Fer4_11 (PF13247.12), Fer4_10 (PF13237.12), Nitr_red_bet_C (PF14711.12). | Fer4_11 Fer4_10 Nitr_red_bet_C |
Family assigned |
| narJ Rv1163 |
- |
nitrate reductase subunit delta | Nitrate reductase subunit delta. Pfam: Nitrate_red_del (PF02613.21). | Nitrate_red_del |
Family assigned |
| narI Rv1164 |
mtbc0_001253 |
nitrate reductase subunit gamma | Respiratory nitrate reductase subunit gamma. Pfam: Nitrate_red_gam (PF02665.20). | Nitrate_red_gam |
Family assigned |
| typA Rv1165 |
mtbc0_001254 |
GTP-binding translation elongation factor | Translational GTPase TypA. Pfam: GTP_EFTU (PF00009.34), EF-G_D2 (PF22042.3), GTP_EFTU_D2 (PF03144.32), EFG_C (PF00679.31), BipA_C (PF21018.3). | GTP_EFTU EF-G_D2 GTP_EFTU_D2 EFG_C BipA_C |
Resolved |
| lpqW Rv1166 |
mtbc0_001255 |
monoacyl phosphatidylinositol tetramannoside-binding protein LpqW | Lipoarabinomannan biosynthesis protein LpqW. Pfam: SBP_bac_5 (PF00496.28). | SBP_bac_5 |
Resolved |
| Rv1167c Rv1167c |
mtbc0_001256 |
transcriptional regulator | TetR/AcrR family transcriptional regulator. Pfam: TetR_N (PF00440.30), TetR_C_11 (PF16859.11). | TetR_N TetR_C_11 |
Family assigned |
| PPE17 Rv1168c |
- |
PPE family protein PPE17 | PPE family protein PPE17. Pfam: PPE (PF00823.26), EspB_PPE (PF21856.3), PPE-SVP (PF12484.14). | PPE EspB_PPE PPE-SVP |
Family assigned |
| lipX Rv1169c |
- |
lipase LipX | Lipase LipX. Pfam: PE (PF00934.26). | PE |
Resolved |
| mshB Rv1170 |
mtbc0_001259 |
1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase | N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase. Pfam: PIG-L (PF02585.23). | PIG-L |
Resolved |
| Rv1171 Rv1171 |
mtbc0_001260 |
hypothetical protein | Polytopic integral membrane protein with 4 predicted transmembrane helices (DeepTMHMM). RefSeq leaves it 'hypothetical protein'. A topological feature consistent with a membrane transporter/permease or membrane-embedded enzyme; the transported substrate and molecular function are undetermined. | Family assigned | |
| PE12 Rv1172c |
- |
PE family protein PE12 | PE family protein PE12. Pfam: PE (PF00934.26). | PE |
Family assigned |
| fbiC Rv1173 |
mtbc0_001262 |
FO synthase | Bifunctional FO biosynthesis protein CofGH. Pfam: Radical_SAM (PF04055.28), CofH_C (PF19288.5). | Radical_SAM CofH_C |
Resolved |
| TB8.4 Rv1174c |
mtbc0_001263 |
low molecular weight T-cell antigen | Hemophore-related protein. | Resolved | |
| fadH Rv1175c |
mtbc0_001264 |
NADPH dependent 2,4-dienoyl-CoA reductase FadH | NADPH-dependent 2%2C4-dienoyl-CoA reductase. Pfam: Oxidored_FMN (PF00724.27), Pyr_redox_2 (PF07992.21), Pyr_redox (PF00070.34), FAD_oxidored (PF12831.14), DAO (PF01266.31), FAD_binding_2 (PF00890.31), NAD_binding_8 (PF13450.13), Amino_oxidase (PF01593.31). | Oxidored_FMN Pyr_redox_2 Pyr_redox FAD_oxidored DAO FAD_binding_2 NAD_binding_8 Amino_oxidase |
Resolved |
| Rv1176c Rv1176c |
mtbc0_001265 |
hypothetical protein | PadR family transcriptional regulator. Pfam: PadR (PF03551.21), Vir_act_alpha_C (PF10400.16). | PadR Vir_act_alpha_C |
Family assigned |
| fdxC Rv1177 |
mtbc0_001266 |
ferredoxin FdxC | Ferredoxin family protein. Pfam: Fer4 (PF00037.33). | Fer4 |
Family assigned |
| dapC Rv1178 |
mtbc0_001267 |
aminotransferase | Succinyldiaminopimelate transaminase. Pfam: Aminotran_1_2 (PF00155.28). | Aminotran_1_2 |
Resolved |
| Rv1179c Rv1179c |
mtbc0_001268 |
hypothetical protein | DEAD/DEAH box helicase family protein. Pfam: ResIII (PF04851.22). | ResIII |
Family assigned |
| pks3 Rv1180 |
- |
polyketide beta-ketoacyl synthase | Polyketide beta-ketoacyl synthase. Pfam: ketoacyl-synt (PF00109.33), Thiolase_N (PF00108.30), Ketoacyl-synt_C (PF02801.29), KAsynt_C_assoc (PF16197.12). | ketoacyl-synt Thiolase_N Ketoacyl-synt_C KAsynt_C_assoc |
Resolved |
| pks4 Rv1181 |
- |
polyketide beta-ketoacyl synthase | Polyketide beta-ketoacyl synthase. Pfam: Acyl_transf_1 (PF00698.27), PKS_DH_N (PF21089.4), PS-DH (PF14765.13), SpnB_Rossmann (PF22953.4), ADH_N (PF08240.18), ADH_zinc_N (PF00107.33), ADH_zinc_N_2 (PF13602.13), KR (PF08659.17), adh_short (PF00106.32), PP-binding (PF00550.32). | Acyl_transf_1 PKS_DH_N PS-DH SpnB_Rossmann ADH_N ADH_zinc_N ADH_zinc_N_2 KR adh_short PP-binding |
Resolved |
| papA3 Rv1182 |
mtbc0_001270 |
acyltransferase papA3 | Acyltransferase PapA3. Pfam: Condensation (PF00668.26). | Condensation |
Resolved |
| mmpL10 Rv1183 |
mtbc0_001271 |
transmembrane transport protein MmpL10 | RND transporter MmpL10. Pfam: MMPL (PF03176.22). | MMPL |
Resolved |
| chp2 Rv1184c |
mtbc0_001272 |
hypothetical protein | Diacyltrehalose acyltransferase Chp2. Pfam: PE-PPE (PF08237.18). | PE-PPE |
Resolved |
| fadD21 Rv1185c |
mtbc0_001273 |
fatty-acid--CoA ligase FadD21 | Fatty-acid--AMP ligase FAAL21/FadD21. Pfam: AMP-binding (PF00501.35), AMP-dom_DIP2-like (PF23024.2). | AMP-binding AMP-dom_DIP2-like |
Resolved |
| Rv1186c Rv1186c |
mtbc0_001274 |
hypothetical protein | PucR family transcriptional regulator. Pfam: HTH_30 (PF13556.13). | HTH_30 |
Family assigned |
| rocA Rv1187 |
mtbc0_001275 |
pyrroline-5-carboxylate dehydrogenase RocA | L-glutamate gamma-semialdehyde dehydrogenase. Pfam: Aldedh (PF00171.28). | Aldedh |
Resolved |
| Rv1188 Rv1188 |
mtbc0_001276 |
proline dehydrogenase | Proline dehydrogenase. Pfam: Pro_dh (PF01619.25). | Pro_dh |
Resolved |
| sigI Rv1189 |
mtbc0_001277 |
ECF RNA polymerase sigma factor SigI | RNA polymerase sigma factor SigI. Pfam: Sigma70_r2 (PF04542.21), Sigma70_r4_2 (PF08281.19). | Sigma70_r2 Sigma70_r4_2 |
Resolved |
| Rv1190 Rv1190 |
mtbc0_001278 |
hypothetical protein | Alpha/beta fold hydrolase. Pfam: Abhydrolase_1 (PF00561.27), Abhydrolase_6 (PF12697.14). | Abhydrolase_1 Abhydrolase_6 |
Resolved |
| Rv1191 Rv1191 |
mtbc0_001279 |
hypothetical protein | Alpha/beta hydrolase. Pfam: Abhydrolase_1 (PF00561.27), Hydrolase_4 (PF12146.16). | Abhydrolase_1 Hydrolase_4 |
Family assigned |
| Rv1192 Rv1192 |
mtbc0_001280 |
hypothetical protein | Alpha/beta hydrolase. | Family assigned | |
| fadD36 Rv1193 |
mtbc0_001281 |
fatty-acid--CoA ligase FadD36 | Acyl-CoA synthetase. Pfam: AMP-binding (PF00501.35), AMP-binding_C (PF13193.13). | AMP-binding AMP-binding_C |
Resolved |
| Rv1194c Rv1194c |
mtbc0_001282 |
hypothetical protein | PucR family transcriptional regulator. Pfam: GGDEF_2 (PF17853.7), HTH_30 (PF13556.13). | GGDEF_2 HTH_30 |
Family assigned |
| PE13 Rv1195 |
- |
PE family protein PE13 | PE family protein PE13. Pfam: PE (PF00934.26). | PE |
Family assigned |
| PPE18 Rv1196 |
- |
PPE family protein PPE18 | PPE family protein PPE18. Pfam: PPE (PF00823.26), PPE-SVP (PF12484.14). | PPE PPE-SVP |
Family assigned |
| esxK Rv1197 |
mtbc0_001285 |
ESAT-6 like protein EsxK | Type VII secretion system ESX-5 protein EsxJ. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| esxL Rv1198 |
mtbc0_001286 |
ESAT-6 like protein EsxL | Type VII secretion system ESX-5 protein EsxL. Pfam: WXG100 (PF06013.19). | WXG100 |
Resolved |
| Rv1199c Rv1199c |
mtbc0_001287 |
insertion sequence element IS1081 transposase | IS256-like element IS1081 family transposase. Pfam: Transposase_mut (PF00872.25). | Transposase_mut |
Family assigned |
| Rv1200 Rv1200 |
mtbc0_001288 |
integral membrane transport protein | MHS family MFS transporter. Pfam: Sugar_tr (PF00083.31), MFS_1 (PF07690.22). | Sugar_tr MFS_1 |
Family assigned |
| dapD Rv1201c |
mtbc0_001289 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase. Pfam: THDPS_M (PF14789.12), Hexapep_2 (PF14602.13). | THDPS_M Hexapep_2 |
Resolved |
| dapE Rv1202 |
- |
succinyl-diaminopimelate desuccinylase DapE | Succinyl-diaminopimelate desuccinylase DapE. Pfam: Peptidase_M28 (PF04389.23), Peptidase_M20 (PF01546.34), M20_dimer (PF07687.20). | Peptidase_M28 Peptidase_M20 M20_dimer |
Resolved |
| Rv1203c Rv1203c |
- |
hypothetical protein | Conserved hypothetical; function unknown. Structure-based hint rejected: weak fold echo only (HEAT-repeat alpha-solenoid); function unknown. | Still unknown | |
| Rv1204c Rv1204c |
- |
hypothetical protein | Conserved hypothetical protein; no recognised domain. Function unknown. | Still unknown |