MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3908 · 46 genes shown · anchor murJ · open gene page → · ← back to 1 hop

Evidence: Min score 0
mutT4 (requalified) — NUDIX hydrolase mutT4 Rv3909 (dark) — hypothetical protein Rv3909 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ rsmA (requalified) — anti-sigma-M factor RsmA rsmA sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM pcnA (requalified) — poly(A) polymerase PcnA pcnA Rv3906c (requalified) — pullulanase Rv3906c trxB2 (requalified) — thioredoxin-disulfide reductase trxB2 trxC (requalified) — thioredoxin trxC Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 crp (family_assigned) — cAMP-activated global transcriptional regulator CR crp mutT1 (requalified) — NUDIX hydrolase mutT1 ephD (family_assigned) — SDR family oxidoreductase ephD Rv3835 (family_assigned) — septum formation family protein Rv3835 fhaA (requalified) — cell division-associated protein FhaA fhaA sigC (requalified) — RNA polymerase sigma factor SigC sigC dapB (requalified) — 4-hydroxy-tetrahydrodipicolinate reductase dapB whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA Rv1125 (family_assigned) — WS/DGAT domain-containing protein Rv1125 Rv0513 (family_assigned) — DUF3093 domain-containing protein Rv0513 trxB1 (requalified) — thioredoxin trxB1 csd (requalified) — cysteine desulfurase csd ahpC (requalified) — peroxiredoxin AhpC ahpC Rv1324 (requalified) — co-chaperone YbbN Rv1324 trxA (family_assigned) — thioredoxin family protein trxA dnaJ2 (requalified) — molecular chaperone DnaJ dnaJ2 Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv0948c (requalified) — chorismate mutase Rv0948c murA (requalified) — UDP-N-acetylglucosamine 1-carboxyvinyltransferase murA Rv2179c (requalified) — polyadenylate-specific 3'-exoribonuclease AS Rv2179c marP (requalified) — acid resistance serine protease MarP marP Rv2239c (family_assigned) — hypothetical protein Rv2239c Rv3645 (family_assigned) — adenylate/guanylate cyclase domain-containing prot Rv3645 Rv1339 (family_assigned) — hypothetical protein Rv1339 Rv2212 (requalified) — adenylyl cyclase Rv2212 cya (requalified) — adenylate cyclase cya ppk1 (requalified) — RNA degradosome polyphosphate kinase ppk1 cofC (requalified) — 2-phospho-L-lactate guanylyltransferase cofC pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT gpdA2 (requalified) — NAD(P)H-dependent glycerol-3-phosphate dehydrogena gpdA2 Rv1700 (requalified) — ADP-ribose diphosphatase Rv1700 cobIJ (requalified) — precorrin-2 C(20)-methyltransferase cobIJ pks12 (requalified) — type I polyketide synthase pks12 mas (requalified) — mycocerosate synthase mas pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.