MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3907c · 46 genes shown · anchor mutT4 · open gene page → · ← back to 1 hop

Evidence: Min score 0
pcnA (requalified) — poly(A) polymerase PcnA pcnA Rv3906c (requalified) — pullulanase Rv3906c dapB (requalified) — 4-hydroxy-tetrahydrodipicolinate reductase dapB mutT4 (requalified) — NUDIX hydrolase mutT4 Rv3909 (dark) — hypothetical protein Rv3909 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 esxF (requalified) — pore-forming CpnT exporter EsxF esxF esxE (requalified) — ESAT-6 like protein EsxE esxE cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT ift (requalified) — necrotizing toxin immunity factor IFT ift mrsA (requalified) — phosphoglucosamine mutase mrsA gpsI (requalified) — polyribonucleotide nucleotidyltransferase gpsI ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA Rv1125 (family_assigned) — WS/DGAT domain-containing protein Rv1125 Rv0513 (family_assigned) — DUF3093 domain-containing protein Rv0513 dapA (requalified) — 4-hydroxy-tetrahydrodipicolinate synthase dapA dapD (requalified) — 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxyla dapD Rv2772c (family_assigned) — hypothetical protein Rv2772c lysA (requalified) — diaminopimelate decarboxylase lysA Rv2771c (family_assigned) — flavodoxin family protein Rv2771c rsmA (requalified) — anti-sigma-M factor RsmA rsmA sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM Rv3835 (family_assigned) — septum formation family protein Rv3835 fhaA (requalified) — cell division-associated protein FhaA fhaA sigA (requalified) — RNA polymerase sigma factor sigA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c secG (family_assigned) — preprotein translocase subunit SecG secG rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ esxG (requalified) — type VII secretion system protein EsxG esxG eccD4 (family_assigned) — type VII secretion system ESX-4 subunit EccD4 eccD4 Rv3446c (family_assigned) — type VII secretion-associated protein Rv3446c Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv3899c (family_assigned) — hypothetical protein Rv3899c Rv2082 (dark) — DUF5631 domain-containing protein Rv2082 glmU (requalified) — bifunctional UDP-N-acetylglucosamine diphosphoryla glmU glmS (requalified) — glutamine--fructose-6-phosphate transaminase (isom glmS nagA (requalified) — N-acetylglucosamine-6-phosphate deacetylase nagA Rv3440c (family_assigned) — hypothetical protein Rv3440c Rv3439c (family_assigned) — hypothetical protein Rv3439c rpsI (requalified) — 30S ribosomal protein S9 rpsI rhlE (requalified) — DEAD/DEAH box helicase rhlE rplD (requalified) — 50S ribosomal protein L4 rplD pepR (family_assigned) — pitrilysin family protein pepR

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.