MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3906c · 46 genes shown · anchor pcnA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3906c (requalified) — pullulanase Rv3906c pcnA (requalified) — poly(A) polymerase PcnA pcnA murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ Rv3909 (dark) — hypothetical protein Rv3909 ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA Rv1125 (family_assigned) — WS/DGAT domain-containing protein Rv1125 Rv0513 (family_assigned) — DUF3093 domain-containing protein Rv0513 chiZ (requalified) — cell wall hydrolase ChiZ chiZ Rv1836c (family_assigned) — substrate-binding domain-containing protein Rv1836c Rv0756c (family_assigned) — hypothetical protein Rv0756c Rv2743c (family_assigned) — hypothetical protein Rv2743c pirG (requalified) — exported repetitive protein pirG Rv3707c (requalified) — hypothetical protein Rv3707c dapB (requalified) — 4-hydroxy-tetrahydrodipicolinate reductase dapB mutT4 (requalified) — NUDIX hydrolase mutT4 whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 fhaA (requalified) — cell division-associated protein FhaA fhaA rsmA (requalified) — anti-sigma-M factor RsmA rsmA sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM Rv3835 (family_assigned) — septum formation family protein Rv3835 Rv0385 (requalified) — FAD-binding oxidoreductase Rv0385 pyrE (requalified) — orotate phosphoribosyltransferase pyrE pyrD (requalified) — quinone-dependent dihydroorotate dehydrogenase pyrD carB (family_assigned) — carbamoyl-phosphate synthase large subunit carB Rv0381c (dark) — hypothetical protein Rv0381c ephC (requalified) — epoxide hydrolase EphC ephC pks13 (requalified) — polyketide synthase Pks13 pks13 pks12 (requalified) — type I polyketide synthase pks12 ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 Rv0514 (dark) — hypothetical protein Rv0514 hemD (requalified) — uroporphyrin-III C-methyltransferase hemD hemC (requalified) — hydroxymethylbilane synthase hemC hemB (requalified) — porphobilinogen synthase hemB hemA (requalified) — glutamyl-tRNA reductase hemA ubiA (requalified) — decaprenyl-phosphate phosphoribosyltransferase ubiA lexA (requalified) — transcriptional repressor LexA lexA nrdR (family_assigned) — transcriptional regulator NrdR nrdR Rv0479c (family_assigned) — DUF2993 domain-containing protein Rv0479c glcB (requalified) — malate synthase G glcB Rv1835c (family_assigned) — CocE/NonD family hydrolase Rv1835c Rv1324 (requalified) — co-chaperone YbbN Rv1324 phoP (requalified) — two-component system response regulator PhoP phoP phoR (requalified) — sensory box histidine kinase PhoR phoR lprB (family_assigned) — DUF3558 domain-containing protein lprB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.