MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3880c · 46 genes shown · anchor espB · open gene page → · ← back to 1 hop

Evidence: Min score 0
espL (requalified) — type VII secretion system ESX-1 associated protein espL espB (requalified) — type VII secretion system ESX-1 target EspB espB eccE1 (family_assigned) — type VII secretion system ESX-1 subunit EccE1 eccE1 recR (requalified) — recombination mediator RecR recR mycP1 (requalified) — type VII secretion system ESX-1 serine protease my mycP1 espD (requalified) — type VII secretion system ESX-1 target EspD espD atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c rimP (requalified) — ribosome maturation factor RimP rimP rplM (requalified) — 50S ribosomal protein L13 rplM rplL (requalified) — 50S ribosomal protein L7/L12 rplL cinA (requalified) — competence/damage-inducible protein A cinA espK (family_assigned) — ESX-1 secretion-associated protein EspK espK espE (requalified) — type VII secretion system ESX-1 associated protein espE PPE68 (family_assigned) — PPE family protein PPE68 PPE68 eccB1 (family_assigned) — type VII secretion system ESX-1 subunit EccB1 eccB1 eccCa1 (family_assigned) — type VII secretion system ESX-1 FtsK/SpoIIIE famil eccCa1 eccD1 (family_assigned) — type VII secretion system ESX-1 subunit EccD1 eccD1 Rv3716c (family_assigned) — YbaB/EbfC family nucleoid-associated protein Rv3716c recO (requalified) — DNA repair protein RecO recO Rv3717 (family_assigned) — hypothetical protein Rv3717 uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3714c (family_assigned) — hypothetical protein Rv3714c eccA2 (family_assigned) — type VII secretion system ESX-2 AAA family ATPase eccA2 espC (requalified) — type VII secretion system ESX-1 filament-forming t espC espA (requalified) — type VII secretion system ESX-1 target EspA espA Rv3613c (family_assigned) — hypothetical protein Rv3613c Rv3612c (dark) — hypothetical protein Rv3612c eccCb1 (family_assigned) — type VII secretion system ESX-1 FtsK/SpoIIIE famil eccCb1 atpF (family_assigned) — F0F1 ATP synthase subunit B atpF atpG (family_assigned) — F0F1 ATP synthase subunit gamma atpG atpA (family_assigned) — F0F1 ATP synthase subunit alpha atpA atpD (family_assigned) — F0F1 ATP synthase subunit beta atpD atpC (family_assigned) — F0F1 ATP synthase subunit epsilon atpC atpE (family_assigned) — F0F1 ATP synthase subunit C atpE Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv2191 (family_assigned) — hypothetical protein Rv2191 dnaQ (family_assigned) — DEDDh family exonuclease dnaQ nusA (requalified) — transcription termination factor NusA nusA rpsL (requalified) — 30S ribosomal protein S12 rpsL Rv2840c (family_assigned) — hypothetical protein Rv2840c infB (requalified) — translation initiation factor IF-2 infB rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.