MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3716c · 46 genes shown · anchor recR · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3716c (family_assigned) — YbaB/EbfC family nucleoid-associated protein Rv3716c recR (requalified) — recombination mediator RecR recR clpP2 (family_assigned) — ATP-dependent CLP protease proteolytic subunit Clp clpP2 Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv3714c (family_assigned) — hypothetical protein Rv3714c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX rimP (requalified) — ribosome maturation factor RimP rimP atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH rplM (requalified) — 50S ribosomal protein L13 rplM Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c ask (requalified) — aspartate kinase ask rplL (requalified) — 50S ribosomal protein L7/L12 rplL clpX (family_assigned) — ATP-dependent Clp protease ATP-binding subunit Clp clpX recO (requalified) — DNA repair protein RecO recO espL (requalified) — type VII secretion system ESX-1 associated protein espL uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 clpP1 (family_assigned) — ATP-dependent CLP protease proteolytic subunit 1 clpP1 clpC1 (family_assigned) — ATP-dependent protease ATP-binding subunit ClpC clpC1 tig (requalified) — trigger factor tig clpB (requalified) — chaperone protein ClpB clpB Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 Rv0063 (requalified) — FAD-binding oxidoreductase Rv0063 Rv3209 (family_assigned) — MmpS family transport accessory protein Rv3209 Rv3096 (requalified) — 1%2C4-beta-xylanase Rv3096 radA (requalified) — DNA repair protein RadA radA disA (requalified) — DNA integrity scanning diadenylate cyclase DisA disA gltB (family_assigned) — glutamate synthase large subunit gltB Rv3776 (family_assigned) — hypothetical protein Rv3776 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv2191 (family_assigned) — hypothetical protein Rv2191 dnaQ (family_assigned) — DEDDh family exonuclease dnaQ nusA (requalified) — transcription termination factor NusA nusA rpsL (requalified) — 30S ribosomal protein S12 rpsL Rv2840c (family_assigned) — hypothetical protein Rv2840c infB (requalified) — translation initiation factor IF-2 infB rbfA (requalified) — 30S ribosome-binding factor RbfA rbfA rpsJ (requalified) — 30S ribosomal protein S10 rpsJ atpF (family_assigned) — F0F1 ATP synthase subunit B atpF atpG (family_assigned) — F0F1 ATP synthase subunit gamma atpG atpA (family_assigned) — F0F1 ATP synthase subunit alpha atpA atpD (family_assigned) — F0F1 ATP synthase subunit beta atpD atpC (family_assigned) — F0F1 ATP synthase subunit epsilon atpC atpE (family_assigned) — F0F1 ATP synthase subunit C atpE rplY (requalified) — 50S ribosomal protein L25/general stress protein C rplY

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.