MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3715c · 46 genes shown · anchor uvrD1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
recR (requalified) — recombination mediator RecR recR Rv3716c (family_assigned) — YbaB/EbfC family nucleoid-associated protein Rv3716c recO (requalified) — DNA repair protein RecO recO Rv3717 (family_assigned) — hypothetical protein Rv3717 espL (requalified) — type VII secretion system ESX-1 associated protein espL uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3714c (family_assigned) — hypothetical protein Rv3714c Rv2455c (family_assigned) — 2-oxoacid:acceptor oxidoreductase subunit alpha Rv2455c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX fas (requalified) — fatty acid synthase fas rplU (requalified) — 50S ribosomal protein L21 rplU ftsW (family_assigned) — putative lipid II flippase FtsW ftsW nusG (requalified) — transcription termination/antitermination protein nusG clpP2 (family_assigned) — ATP-dependent CLP protease proteolytic subunit Clp clpP2 rimP (requalified) — ribosome maturation factor RimP rimP Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c Rv2360c (family_assigned) — hypothetical protein Rv2360c amiA2 (requalified) — amidase amiA2 phoH1 (requalified) — phosphate starvation-inducible protein PhoH phoH1 Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c Rv3915 (requalified) — peptidoglycan hydrolase Rv3915 Rv0063 (requalified) — FAD-binding oxidoreductase Rv0063 Rv3209 (family_assigned) — MmpS family transport accessory protein Rv3209 Rv3096 (requalified) — 1%2C4-beta-xylanase Rv3096 espB (requalified) — type VII secretion system ESX-1 target EspB espB eccE1 (family_assigned) — type VII secretion system ESX-1 subunit EccE1 eccE1 mycP1 (requalified) — type VII secretion system ESX-1 serine protease my mycP1 espD (requalified) — type VII secretion system ESX-1 target EspD espD atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH adnB (requalified) — ATP-dependent DNA helicase AdnB adnB uvrD2 (requalified) — ATP-dependent DNA helicase UvrD2 uvrD2 adnA (requalified) — ATP-dependent DNA helicase AdnA adnA mku (requalified) — Ku protein mku uvrB (family_assigned) — excinuclease ABC subunit UvrB uvrB Rv0948c (requalified) — chorismate mutase Rv0948c radA (requalified) — DNA repair protein RadA radA disA (requalified) — DNA integrity scanning diadenylate cyclase DisA disA gltB (family_assigned) — glutamate synthase large subunit gltB Rv3776 (family_assigned) — hypothetical protein Rv3776 Rv2454c (family_assigned) — 2-oxoacid:ferredoxin oxidoreductase subunit beta Rv2454c icd2 (requalified) — NADP-dependent isocitrate dehydrogenase icd2 aroF (requalified) — chorismate synthase aroF pta (requalified) — phosphate acetyltransferase pta sucD (family_assigned) — succinyl-CoA ligase subunit alpha sucD sucC (family_assigned) — ADP-forming succinate--CoA ligase subunit beta sucC Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.