MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3541c · 37 genes shown · anchor ltp2 · open gene page → · ← back to 1 hop

Evidence: Min score 0
chsH1 (family_assigned) — 3-oxo-23%2C24-bisnorchol-4%2C17(20)-dien-22-oyl-Co chsH1 chsH2 (family_assigned) — 3-oxo-23%2C24-bisnorchol-4%2C17(20)-dien-22-oyl-Co chsH2 ltp2 (requalified) — lipid-transfer protein ltp2 fadE29 (requalified) — acyl-CoA dehydrogenase FadE29 fadE29 fadE28 (requalified) — acyl-CoA dehydrogenase FadE28 fadE28 cyp125 (requalified) — steroid C26-monooxygenase cyp125 fadA5 (requalified) — steroid 3-ketoacyl-CoA thiolase fadA5 fadE26 (requalified) — acyl-CoA dehydrogenase fadE26 fadE34 (requalified) — acyl-CoA dehydrogenase fadE34 ltp4 (family_assigned) — thiolase domain-containing protein ltp4 fadE31 (family_assigned) — acyl-CoA dehydrogenase family protein fadE31 echA20 (family_assigned) — enoyl-CoA hydratase family protein echA20 Rv3521 (family_assigned) — hypothetical protein Rv3521 ltp3 (family_assigned) — thiolase domain-containing protein ltp3 fadB (requalified) — fatty oxidation protein FadB fadB pks13 (requalified) — polyketide synthase Pks13 pks13 cyp142 (requalified) — steroid C26-monooxygenase Cyp142 cyp142 Rv1106c (requalified) — 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-is Rv1106c fadB2 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB2 fadB2 fadB3 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB fadB3 fadE27 (family_assigned) — acyl-CoA dehydrogenase family protein fadE27 Rv3502c (requalified) — 3-oxoacyl-ACP reductase Rv3502c echA19 (family_assigned) — crotonase/enoyl-CoA hydratase family protein echA19 fadD17 (requalified) — long-chain-fatty-acid--CoA ligase FadD17 fadD17 kstR (family_assigned) — cholesterol catabolism transcriptional regulator K kstR fadE33 (family_assigned) — acyl-CoA dehydrogenase family protein fadE33 fadE32 (family_assigned) — acyl-CoA dehydrogenase family protein fadE32 Rv3559c (family_assigned) — SDR family oxidoreductase Rv3559c fadD3 (requalified) — 3-((3aS%2C4S%2C7aS)-7a-methyl-1%2C5-dioxo-octahydr fadD3 fadE30 (family_assigned) — acyl-CoA dehydrogenase family protein fadE30 Rv3551 (family_assigned) — CoA transferase subunit A Rv3551 Rv3552 (family_assigned) — CoA-transferase subunit beta Rv3552 Rv3549c (family_assigned) — SDR family oxidoreductase Rv3549c Rv3553 (requalified) — nitronate monooxygenase Rv3553 Rv3548c (family_assigned) — SDR family oxidoreductase Rv3548c Rv3520c (requalified) — coenzyme F420-dependent oxidoreductase Rv3520c Rv0940c (family_assigned) — TIGR03619 family F420-dependent LLM class oxidored Rv0940c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.