MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3413c · 46 genes shown · anchor sigD · open gene page → · ← back to 1 hop

Evidence: Min score 0
rsdA (requalified) — anti-sigma D factor RsdA rsdA sigD (requalified) — ECF RNA polymerase sigma factor SigD sigD Rv3415c (family_assigned) — hypothetical protein Rv3415c Rv0210 (family_assigned) — hypothetical protein Rv0210 Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv2360c (family_assigned) — hypothetical protein Rv2360c Rv0996 (family_assigned) — hypothetical protein Rv0996 Rv0481c (family_assigned) — DUF2505 domain-containing protein Rv0481c lppL (family_assigned) — hypothetical protein lppL Rv3071 (family_assigned) — DUF190 domain-containing protein Rv3071 Rv3438 (family_assigned) — alpha/beta hydrolase Rv3438 Rv2474c (family_assigned) — hypothetical protein Rv2474c Rv2732c (family_assigned) — hypothetical protein Rv2732c Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c ripA (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipA ripA pirG (requalified) — exported repetitive protein pirG Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv2695 (requalified) — alpha/beta fold hydrolase Rv2695 octT (requalified) — diglucosylglycerate octanoyltransferase octT Rv2186c (requalified) — polyketide cyclase / dehydrase and lipid transport Rv2186c ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA Rv0209 (family_assigned) — hypothetical protein Rv0209 trmB (requalified) — tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB Rv0207c (family_assigned) — NYN domain-containing protein Rv0207c Rv2687c (family_assigned) — fluoroquinolone transporter permease Rv2687c menD (requalified) — 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 menD bpoC (family_assigned) — alpha/beta hydrolase bpoC mgtA (requalified) — GDP-mannose-dependent alpha-mannosyltransferase mgtA Rv2446c (dark) — DUF4233 domain-containing protein Rv2446c Rv3212 (family_assigned) — hypothetical protein Rv3212 Rv1632c (family_assigned) — DUF402 domain-containing protein Rv1632c Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c recO (requalified) — DNA repair protein RecO recO amiA2 (requalified) — amidase amiA2 Rv0497 (family_assigned) — hypothetical protein Rv0497 moeA1 (requalified) — molybdopterin molybdenumtransferase 1 moeA1 hbhA (requalified) — heparin-binding hemagglutinin HbhA hbhA Rv0479c (family_assigned) — DUF2993 domain-containing protein Rv0479c lprQ (requalified) — L%2CD-transpeptidase LdtMt5 lprQ murB (requalified) — UDP-N-acetylmuramate dehydrogenase murB Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv1081c (dark) — DUF4307 domain-containing protein Rv1081c Rv2743c (family_assigned) — hypothetical protein Rv2743c Rv0431 (requalified) — tuberculin-like peptide Rv0431 crcB (requalified) — fluoride efflux transporter CrcB crcB crcB (requalified) — fluoride efflux transporter CrcB crcB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.