MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3382c · 33 genes shown · anchor idsB · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c idsB (family_assigned) — polyprenyl synthetase family protein idsB gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rpsA (requalified) — 30S ribosomal protein S1 rpsA lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idi (requalified) — isopentenyl-diphosphate Delta-isomerase idi Rv1086 (family_assigned) — undecaprenyl diphosphate synthase family protein Rv1086 dxs2 (requalified) — 1-deoxy-D-xylulose-5-phosphate synthase dxs2 ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD grcC2 (requalified) — polyprenyl-diphosphate synthase GrcC grcC2 grcC1 (requalified) — polyprenyl-diphosphate synthase GrcC grcC1 Rv2867c (family_assigned) — GNAT family N-acetyltransferase Rv2867c rip (requalified) — zinc metalloprotease Rip rip rpsH (requalified) — 30S ribosomal protein S8 rpsH rplD (requalified) — 50S ribosomal protein L4 rplD rpsK (requalified) — 30S ribosomal protein S11 rpsK rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsD (requalified) — 30S ribosomal protein S4 rpsD phyA (requalified) — presqualene diphosphate synthase HpnD phyA Rv2361c (requalified) — decaprenyl diphosphate synthase Rv2361c dxs1 (requalified) — 1-deoxy-D-xylulose 5-phosphate synthase dxs1 thiG (requalified) — thiazole synthase thiG Rv3378c (requalified) — diterpene synthase Rv3378c Rv3377c (requalified) — type B diterpene cyclase Rv3377c ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE carD (requalified) — RNA polymerase-binding transcription factor CarD carD rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysS1 (requalified) — cysteine--tRNA ligase cysS1

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.