MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3329 · 46 genes shown · anchor sigJ · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3329 (requalified) — aminotransferase Rv3329 sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ bioB (requalified) — biotin synthase BioB bioB bioD (requalified) — dethiobiotin synthase bioD dacB1 (requalified) — D-alanyl-D-alanine carboxypeptidase DacB1 dacB1 nagA (requalified) — N-acetylglucosamine-6-phosphate deacetylase nagA bioF1 (requalified) — 8-amino-7-oxononanoate synthase bioF1 bioF2 (family_assigned) — pyridoxal phosphate-dependent aminotransferase fam bioF2 sugI (requalified) — sugar-transport integral membrane protein SugI sugI rocD1 (family_assigned) — Probable ornithine aminotransferase (N-terminus pa rocD1 Rv2859c (requalified) — gamma-glutamyl-gamma-aminobutyrate hydrolase Rv2859c glnA4 (family_assigned) — glutamine synthetase family protein glnA4 nadE (requalified) — NAD(+) synthase nadE Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR Rv3736 (family_assigned) — AraC family transcriptional regulator Rv3736 Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 bioA (requalified) — adenosylmethionine--8-amino-7-oxononanoate transam bioA Rv1590 (family_assigned) — hypothetical protein Rv1590 birA (requalified) — biotin--[acetyl-CoA-carboxylase] ligase birA Rv1591 (dark) — DUF2567 domain-containing protein Rv1591 Rv1571 (family_assigned) — 2'-5' RNA ligase family protein Rv1571 cobS (requalified) — adenosylcobinamide-GDP ribazoletransferase cobS dacB2 (family_assigned) — penicillin-binding protein DacB2 dacB2 dacB (requalified) — D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-ala dacB ponA1 (requalified) — bifunctional penicillin-insensitive transglycosyla ponA1 glmS (requalified) — glutamine--fructose-6-phosphate transaminase (isom glmS mrsA (requalified) — phosphoglucosamine mutase mrsA devB (requalified) — 6-phosphogluconolactonase devB Rv0669c (requalified) — neutral ceramidase Rv0669c Rv3242c (family_assigned) — ComF family protein Rv3242c Rv1567c (family_assigned) — membrane protein Rv1567c acpA (requalified) — acyl carrier protein acpA Rv0034 (family_assigned) — nuclear transport factor 2 family protein Rv0034 fadD34 (requalified) — fatty-acid--CoA ligase FadD34 fadD34 Rv1672c (requalified) — MFS transporter Rv1672c cycA (requalified) — amino acid permease cycA mmpL9 (requalified) — RND transporter MmpL9 mmpL9 rocD2 (family_assigned) — Probable ornithine aminotransferase (C-terminus pa rocD2 Rv2323c (family_assigned) — hypothetical protein Rv2323c rocE (requalified) — amino acid permease rocE Rv2319c (requalified) — universal stress protein Rv2319c rocA (requalified) — L-glutamate gamma-semialdehyde dehydrogenase rocA proB (requalified) — glutamate 5-kinase proB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.