MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3289c · 46 genes shown · anchor lat · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3289c (dark) — hypothetical protein Rv3289c lat (requalified) — L-lysine 6-transaminase lat usfY (family_assigned) — hypothetical protein usfY lrpA (family_assigned) — transcriptional regulator LrpA lrpA pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd sigF (requalified) — RNA polymerase sigma factor SigF sigF Rv3292 (family_assigned) — VOC family protein Rv3292 rsbW (requalified) — anti-sigma B factor RsbW rsbW Rv1004c (family_assigned) — hypothetical protein Rv1004c lppL (family_assigned) — hypothetical protein lppL Rv0996 (family_assigned) — hypothetical protein Rv0996 mazF8 (requalified) — toxin mazF8 PE8 (family_assigned) — PE family protein PE8 PE8 mbtG (requalified) — NADPH-dependent L-lysine N(6)-monooxygenase MbtG mbtG Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c cobB (requalified) — NAD-dependent protein deacylase cobB mftR (family_assigned) — mycofactocin system transcriptional regulator mftR oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS acs (requalified) — acetate--CoA ligase acs gabT (requalified) — 4-aminobutyrate--2-oxoglutarate transaminase gabT ackA (requalified) — acetate kinase ackA fadB (requalified) — fatty oxidation protein FadB fadB adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA gdh (requalified) — NAD-glutamate dehydrogenase gdh rsfA (requalified) — anti-sigma-F factor antagonist RsfA rsfA Rv1904 (requalified) — anti-sigma factor antagonist Rv1904 rsfB (family_assigned) — STAS domain-containing protein rsfB rplD (requalified) — 50S ribosomal protein L4 rplD ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY rpsB (requalified) — 30S ribosomal protein S2 rpsB rplJ (requalified) — 50S ribosomal protein L10 rplJ rplX (requalified) — 50S ribosomal protein L24 rplX rplW (requalified) — 50S ribosomal protein L23 rplW Rv3212 (family_assigned) — hypothetical protein Rv3212 Rv0556 (family_assigned) — DUF3592 domain-containing protein Rv0556 Rv1081c (dark) — DUF4307 domain-containing protein Rv1081c Rv2743c (family_assigned) — hypothetical protein Rv2743c Rv0431 (requalified) — tuberculin-like peptide Rv0431 moeA1 (requalified) — molybdopterin molybdenumtransferase 1 moeA1 Rv3438 (family_assigned) — alpha/beta hydrolase Rv3438 hbhA (requalified) — heparin-binding hemagglutinin HbhA hbhA ttfA (requalified) — trehalose monomycolate transport factor TtfA ttfA

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.