MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3288c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
usfY (family_assigned) — hypothetical protein usfY Rv3289c (dark) — hypothetical protein Rv3289c lat (requalified) — L-lysine 6-transaminase lat rsbW (requalified) — anti-sigma B factor RsbW rsbW sigF (requalified) — RNA polymerase sigma factor SigF sigF lrpA (family_assigned) — transcriptional regulator LrpA lrpA Rv3292 (family_assigned) — VOC family protein Rv3292 pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd Rv0188 (requalified) — SPW repeat protein Rv0188 Rv2558 (family_assigned) — hypothetical protein Rv2558 Rv2557 (family_assigned) — hypothetical protein Rv2557 Rv2660c (dark) — hypothetical protein Rv2660c Rv1954c (requalified) — hypothetical protein Rv1954c mbtG (requalified) — NADPH-dependent L-lysine N(6)-monooxygenase MbtG mbtG Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c rsfA (requalified) — anti-sigma-F factor antagonist RsfA rsfA Rv1904 (requalified) — anti-sigma factor antagonist Rv1904 rsfB (family_assigned) — STAS domain-containing protein rsfB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c cobB (requalified) — NAD-dependent protein deacylase cobB mftR (family_assigned) — mycofactocin system transcriptional regulator mftR oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS gdh (requalified) — NAD-glutamate dehydrogenase gdh acs (requalified) — acetate--CoA ligase acs gabT (requalified) — 4-aminobutyrate--2-oxoglutarate transaminase gabT ackA (requalified) — acetate kinase ackA fadB (requalified) — fatty oxidation protein FadB fadB adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 Rv0048c (family_assigned) — DUF1707 domain-containing protein Rv0048c Rv1171 (family_assigned) — hypothetical protein Rv1171 Rv1635c (family_assigned) — glycosyltransferase family 39 protein Rv1635c Rv0187 (requalified) — O-methyltransferase Rv0187 Rv1885c (requalified) — chorismate mutase Rv1885c Rv3773c (family_assigned) — TIGR03086 family metal-binding protein Rv3773c Rv2160c (family_assigned) — Conserved hypothetical protein Rv2160c Rv2160A (family_assigned) — Conserved hypothetical protein Rv2160A Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c Rv2302 (family_assigned) — DUF1918 domain-containing protein Rv2302 Rv3481c (family_assigned) — GAP family protein Rv3481c Rv2556c (requalified) — secondary thiamine-phosphate synthase enzyme YjbQ Rv2556c Rv2661c (dark) — hypothetical protein Rv2661c Rv2662 (dark) — hypothetical protein Rv2662 Rv2659c (requalified) — tyrosine-type recombinase/integrase Rv2659c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.