MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3287c · 46 genes shown · anchor sigF · open gene page → · ← back to 1 hop

Evidence: Min score 0
rsbW (requalified) — anti-sigma B factor RsbW rsbW sigF (requalified) — RNA polymerase sigma factor SigF sigF Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c rsfA (requalified) — anti-sigma-F factor antagonist RsfA rsfA Rv1904 (requalified) — anti-sigma factor antagonist Rv1904 rsfB (family_assigned) — STAS domain-containing protein rsfB usfY (family_assigned) — hypothetical protein usfY Rv2638 (requalified) — anti-sigma factor antagonist Rv2638 Rv1354c (requalified) — bifunctional diguanylate cyclase/phosphodiesterase Rv1354c fbiC (requalified) — bifunctional FO biosynthesis protein CofGH fbiC Rv1486c (family_assigned) — hypothetical protein Rv1486c oprA (requalified) — osmosensory protein OprA oprA Rv2743c (family_assigned) — hypothetical protein Rv2743c rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA mkl (family_assigned) — ABC transporter ATP-binding protein mkl Rv3899c (family_assigned) — hypothetical protein Rv3899c Rv1752 (family_assigned) — hypothetical protein Rv1752 Rv2079 (family_assigned) — alpha/beta hydrolase Rv2079 Rv2423 (requalified) — class I SAM-dependent methyltransferase Rv2423 Rv0258c (requalified) — hypothetical protein Rv0258c Rv3289c (dark) — hypothetical protein Rv3289c lat (requalified) — L-lysine 6-transaminase lat lrpA (family_assigned) — transcriptional regulator LrpA lrpA Rv3292 (family_assigned) — VOC family protein Rv3292 moeY (family_assigned) — Rv1355c family protein moeY Rv1353c (family_assigned) — TetR/AcrR family transcriptional regulator C-termi Rv1353c Rv1356c (requalified) — hypothetical protein Rv1356c Rv1358 (family_assigned) — LuxR C-terminal-related transcriptional regulator Rv1358 Rv1357c (requalified) — cyclic diguanylate phosphodiesterase Rv1357c fbiA (requalified) — 2-phospho-L-lactate transferase fbiA thiG (requalified) — thiazole synthase thiG thiC (requalified) — phosphomethylpyrimidine synthase ThiC thiC thiE (requalified) — thiamine phosphate synthase thiE Rv1488 (family_assigned) — SPFH domain-containing protein Rv1488 Rv1489 (family_assigned) — hypothetical protein Rv1489 Rv2360c (family_assigned) — hypothetical protein Rv2360c lppL (family_assigned) — hypothetical protein lppL Rv0263c (family_assigned) — 5-oxoprolinase/urea amidolyase family protein Rv0263c Rv0264c (family_assigned) — allophanate hydrolase subunit 1 Rv0264c 35kd_ag (family_assigned) — hypothetical protein 35kd_ag pirG (requalified) — exported repetitive protein pirG chiZ (requalified) — cell wall hydrolase ChiZ chiZ lmeA (requalified) — mannan chain length control protein LmeA lmeA Rv3707c (requalified) — hypothetical protein Rv3707c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.