MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3286c · 46 genes shown · anchor rsbW · open gene page → · ← back to 1 hop

Evidence: Min score 0
sigF (requalified) — RNA polymerase sigma factor SigF sigF rsbW (requalified) — anti-sigma B factor RsbW rsbW Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC usfY (family_assigned) — hypothetical protein usfY rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA Rv1904 (requalified) — anti-sigma factor antagonist Rv1904 oprA (requalified) — osmosensory protein OprA oprA Rv3289c (dark) — hypothetical protein Rv3289c ssd (requalified) — septum site-determining protein Ssd ssd rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ yajC (family_assigned) — preprotein translocase subunit YajC yajC rsfA (requalified) — anti-sigma-F factor antagonist RsfA rsfA rsfB (family_assigned) — STAS domain-containing protein rsfB Rv1354c (requalified) — bifunctional diguanylate cyclase/phosphodiesterase Rv1354c fbiC (requalified) — bifunctional FO biosynthesis protein CofGH fbiC Rv2638 (requalified) — anti-sigma factor antagonist Rv2638 sigA (requalified) — RNA polymerase sigma factor sigA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 lat (requalified) — L-lysine 6-transaminase lat lrpA (family_assigned) — transcriptional regulator LrpA lrpA Rv3292 (family_assigned) — VOC family protein Rv3292 rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH Rv1752 (family_assigned) — hypothetical protein Rv1752 Rv2079 (family_assigned) — alpha/beta hydrolase Rv2079 Rv2423 (requalified) — class I SAM-dependent methyltransferase Rv2423 Rv0263c (family_assigned) — 5-oxoprolinase/urea amidolyase family protein Rv0263c Rv0264c (family_assigned) — allophanate hydrolase subunit 1 Rv0264c pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd Rv3659c (requalified) — conjugal transfer protein Rv3659c Rv3657c (family_assigned) — membrane protein Rv3657c Rv3658c (family_assigned) — type II secretion system F family protein Rv3658c Rv3656c (dark) — DUF4244 domain-containing protein Rv3656c Rv0990c (family_assigned) — SAF domain-containing protein Rv0990c Rv3654c (family_assigned) — hypothetical protein Rv3654c rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY secG (family_assigned) — preprotein translocase subunit SecG secG secD (family_assigned) — protein translocase subunit SecD secD yidC (requalified) — membrane protein insertase YidC yidC

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.