MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3250c · 46 genes shown · anchor rubA · open gene page → · ← back to 1 hop

Evidence: Min score 0
rubB (requalified) — rubredoxin RubB rubB rubA (requalified) — rubredoxin rubA alkB (requalified) — alkane 1-monooxygenase alkB Rv3249c (family_assigned) — TetR family transcriptional regulator Rv3249c Rv3253c (requalified) — amino acid permease Rv3253c Rv1869c (requalified) — FAD-dependent oxidoreductase Rv1869c Rv0688 (requalified) — FAD/NAD(P)-binding oxidoreductase Rv0688 nirB (family_assigned) — nitrite reductase large subunit NirB nirB sahH (requalified) — adenosylhomocysteinase sahH tmk (requalified) — dTMP kinase tmk bfrB (requalified) — ferritin BfrB bfrB ahpC (requalified) — peroxiredoxin AhpC ahpC mtrA (requalified) — two-component system response regulator MtrA mtrA adhB (requalified) — alcohol dehydrogenase B adhB adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 aldA (requalified) — aldehyde dehydrogenase aldA Rv0885 (requalified) — diiron oxygenase Rv0885 glgE (requalified) — alpha-1,4-glucan:maltose-1-phosphate maltosyltrans glgE treS (requalified) — maltose alpha-D-glucosyltransferase treS aglA (family_assigned) — glycoside hydrolase family 13 protein aglA Rv3254 (requalified) — oxidoreductase Rv3254 nirD (family_assigned) — nitrite reductase small subunit NirD nirD Rv1870c (family_assigned) — hypothetical protein Rv1870c Rv1871c (family_assigned) — nitroreductase family deazaflavin-dependent oxidor Rv1871c Rv0687 (family_assigned) — Rv0687 family mycofactocin-dependent SDR oxidoredu Rv0687 Rv2633c (requalified) — non-heme di-iron catalase Rv2633c narG (family_assigned) — nitrate reductase subunit alpha narG narX (family_assigned) — respiratory nitrate reductase subunit gamma narX narU (family_assigned) — NarK family nitrate/nitrite MFS transporter narU narK3 (requalified) — nitrate/nitrite transporter narK3 narK1 (requalified) — nitrate/nitrite transporter narK1 metE (requalified) — 5-methyltetrahydropteroyltriglutamate--homocystein metE metH (requalified) — methionine synthase metH cbs (requalified) — cystathionine beta-synthase cbs metZ (requalified) — O-succinylhomoserine sulfhydrylase metZ metB (requalified) — cystathionine gamma-synthase metB mtn (requalified) — 5'-methylthioadenosine/adenosylhomocysteine nucleo mtn dut (requalified) — deoxyuridine 5'-triphosphate nucleotidohydrolase dut nrdE (family_assigned) — ribonucleoside-diphosphate reductase subunit alpha nrdE nrdZ (requalified) — adenosylcobalamin-dependent ribonucleoside-diphosp nrdZ thyX (requalified) — FAD-dependent thymidylate synthase thyX thyA (requalified) — thymidylate synthase ThyA thyA ndkA (requalified) — nucleoside-diphosphate kinase ndkA mmcO (requalified) — multicopper oxidase MmcO mmcO bfrA (requalified) — bacterioferritin BfrA bfrA hemZ (requalified) — ferrochelatase hemZ

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.