MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3249c · 46 genes shown · anchor alkB · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3249c (family_assigned) — TetR family transcriptional regulator Rv3249c alkB (requalified) — alkane 1-monooxygenase alkB rubB (requalified) — rubredoxin RubB rubB rubA (requalified) — rubredoxin rubA sahH (requalified) — adenosylhomocysteinase sahH Rv0885 (requalified) — diiron oxygenase Rv0885 tmk (requalified) — dTMP kinase tmk Rv1065 (family_assigned) — cysteine dioxygenase family protein Rv1065 Rv0464c (family_assigned) — carboxymuconolactone decarboxylase family protein Rv0464c eccB3 (family_assigned) — type VII secretion system ESX-3 subunit EccB3 eccB3 Rv3346c (dark) — DUF3017 domain-containing protein Rv3346c lprB (family_assigned) — DUF3558 domain-containing protein lprB Rv3035 (family_assigned) — hypothetical protein Rv3035 adhB (requalified) — alcohol dehydrogenase B adhB adhE1 (family_assigned) — zinc-type alcohol dehydrogenase subunit E adhE1 aldA (requalified) — aldehyde dehydrogenase aldA Rv3253c (requalified) — amino acid permease Rv3253c Rv1869c (requalified) — FAD-dependent oxidoreductase Rv1869c Rv0688 (requalified) — FAD/NAD(P)-binding oxidoreductase Rv0688 nirB (family_assigned) — nitrite reductase large subunit NirB nirB metE (requalified) — 5-methyltetrahydropteroyltriglutamate--homocystein metE metH (requalified) — methionine synthase metH cbs (requalified) — cystathionine beta-synthase cbs metZ (requalified) — O-succinylhomoserine sulfhydrylase metZ metB (requalified) — cystathionine gamma-synthase metB mtn (requalified) — 5'-methylthioadenosine/adenosylhomocysteine nucleo mtn fprB (requalified) — FAD-dependent oxidoreductase fprB serC (requalified) — phosphoserine transaminase serC Rv3338 (family_assigned) — Conserved hypothetical protein Rv3338 sepH (requalified) — septation protein SepH sepH dut (requalified) — deoxyuridine 5'-triphosphate nucleotidohydrolase dut nrdE (family_assigned) — ribonucleoside-diphosphate reductase subunit alpha nrdE nrdZ (requalified) — adenosylcobalamin-dependent ribonucleoside-diphosp nrdZ thyX (requalified) — FAD-dependent thymidylate synthase thyX thyA (requalified) — thymidylate synthase ThyA thyA ndkA (requalified) — nucleoside-diphosphate kinase ndkA Rv1066 (family_assigned) — rhodanese-like domain-containing protein Rv1066 Rv1747 (family_assigned) — ATP-binding cassette domain-containing protein Rv1747 lpqV (requalified) — lipoprotein LpqV lpqV Rv0128 (family_assigned) — YoaK family protein Rv0128 Rv0184 (dark) — DUF2786 domain-containing protein Rv0184 ramB (family_assigned) — acetate metabolism transcriptional regulator RamB ramB Rv1683 (requalified) — acyl-CoA synthetase Rv1683 Rv0466 (requalified) — acyl-[acyl-carrier-protein] thioesterase Rv0466 eccD3 (family_assigned) — type VII secretion system ESX-3 subunit EccD3 eccD3 eccC3 (family_assigned) — type VII secretion system ESX-3 FtsK/SpoIIIE famil eccC3

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.