MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3226c · 43 genes shown · anchor aroA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3226c (requalified) — SOS response-associated peptidase Rv3226c aroA (requalified) — 3-phosphoshikimate 1-carboxyvinyltransferase aroA rsgA (family_assigned) — ribosome small subunit-dependent GTPase A rsgA xerC (requalified) — tyrosine recombinase XerC xerC Rv3225c (family_assigned) — bifunctional GNAT family N-acetyltransferase/amino Rv3225c rfbE (family_assigned) — ABC transporter ATP-binding protein rfbE Rv3242c (family_assigned) — ComF family protein Rv3242c Rv2646 (requalified) — tyrosine-type recombinase/integrase Rv2646 Rv2659c (requalified) — tyrosine-type recombinase/integrase Rv2659c xerD (requalified) — site-specific tyrosine recombinase XerD xerD aroF (requalified) — chorismate synthase aroF aroE (requalified) — shikimate dehydrogenase aroE aroB (requalified) — 3-dehydroquinate synthase aroB aroK (requalified) — shikimate kinase AroK aroK cmk (requalified) — (d)CMP kinase cmk thiL (requalified) — thiamine-phosphate kinase thiL thiE (requalified) — thiamine phosphate synthase thiE adk (requalified) — adenylate kinase adk rpsL (requalified) — 30S ribosomal protein S12 rpsL rpsI (requalified) — 30S ribosomal protein S9 rpsI apt (requalified) — adenine phosphoribosyltransferase apt viuB (requalified) — siderophore-interacting protein viuB tyrA (requalified) — prephenate dehydrogenase TyrA tyrA whiA (family_assigned) — DNA-binding protein WhiA whiA pks1 (requalified) — polyketide synthase pks1 mas (requalified) — mycocerosate synthase mas pks12 (requalified) — type I polyketide synthase pks12 ppsC (requalified) — phthiocerol type I polyketide synthase PpsC ppsC pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 pks2 (requalified) — phthioceranic/hydroxyphthioceranic acid synthase pks2 rfbD (family_assigned) — ABC transporter permease rfbD glfT1 (requalified) — galactofuranosyl transferase GlfT glfT1 bpa (requalified) — proteasome activator protein Bpa bpa Rv3779 (family_assigned) — DUF6541 family protein Rv3779 Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c hemY (requalified) — protoporphyrinogen oxidase hemY nagA (requalified) — N-acetylglucosamine-6-phosphate deacetylase nagA Rv2645 (family_assigned) — hypothetical protein Rv2645 Rv2647 (requalified) — hypothetical protein Rv2647 ftsK (requalified) — DNA translocase FtsK ftsK Rv2658c (family_assigned) — hypothetical protein Rv2658c Rv2655c (family_assigned) — DUF3631 domain-containing protein Rv2655c Rv2657c (family_assigned) — helix-turn-helix domain-containing protein Rv2657c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.