MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv3055 · 44 genes shown · anchor moaR1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 moaR1 (family_assigned) — transcriptional regulator MoaR1 moaR1 dinP (requalified) — DNA polymerase IV dinP Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737 Rv1167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1167c embR (requalified) — response regulator transcription factor EmbR embR oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c mftR (family_assigned) — mycofactocin system transcriptional regulator mftR sigI (requalified) — RNA polymerase sigma factor SigI sigI Rv3830c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3830c Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183 Rv0894 (family_assigned) — hypothetical protein Rv0894 iniR (family_assigned) — isoniazid response ATPase/transcriptional regulato iniR Rv3263 (requalified) — class I SAM-dependent methyltransferase Rv3263 Rv3840 (family_assigned) — transcriptional regulator Rv3840 dnaN (family_assigned) — DNA polymerase III subunit beta dnaN lppK (family_assigned) — hypothetical protein lppK recA (requalified) — intein-containing recombinase RecA recA Rv3054c (requalified) — NADPH-dependent FMN reductase Rv3054c Rv3395c (family_assigned) — hypothetical protein Rv3395c Rv1931c (family_assigned) — transcriptional regulator Rv1931c Rv1724c (dark) — hypothetical protein Rv1724c sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c cobB (requalified) — NAD-dependent protein deacylase cobB kdpE (requalified) — two-component system response regulator KdpE kdpE Rv1556 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1556 Rv0653c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0653c mce3R (family_assigned) — TetR family transcriptional regulator Mce3R mce3R Rv0377 (family_assigned) — LysR family transcriptional regulator Rv0377 Rv2282c (family_assigned) — LysR family transcriptional regulator Rv2282c Rv0494 (family_assigned) — HTH-type transcriptional regulator Rv0494 mftB (requalified) — mycofactocin biosynthesis chaperone MftB mftB mftC (requalified) — mycofactocin radical SAM maturase mftC Rv0690c (family_assigned) — DUF2332 domain-containing protein Rv0690c Rv1190 (requalified) — alpha/beta fold hydrolase Rv1190 cmr (family_assigned) — HTH-type transcriptional regulator Cmr cmr Rv1359 (family_assigned) — transcriptional regulator Rv1359 Rv3829c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv3829c Rv3182 (family_assigned) — type II toxin-antitoxin system RelE/ParE family to Rv3182 Rv3066 (family_assigned) — TetR/AcrR family transcriptional regulator Rv3066 Rv1776c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1776c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.