MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2828A · 44 genes shown · anchor vapB22 · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2828A (dark) — hypothetical protein Rv2828A Rv2828c (family_assigned) — DUF1802 family protein Rv2828c vapB22 (family_assigned) — type II toxin-antitoxin system prevent-host-death vapB22 vapC22 (family_assigned) — PIN domain-containing protein vapC22 echA16 (requalified) — enoyl-CoA hydratase echA16 ligC (requalified) — ATP-dependent DNA ligase ligC Rv1156 (requalified) — HhH-GPD-type base excision DNA repair protein Rv1156 Rv2570 (family_assigned) — MmcQ/YjbR family DNA-binding protein Rv2570 Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c ligD (requalified) — non-homologous end-joining DNA ligase ligD ligD (requalified) — ATP-dependent DNA ligase ligD Rv2826c (family_assigned) — nucleotidyl transferase AbiEii/AbiGii toxin family Rv2826c Rv2827c (family_assigned) — type IV toxin-antitoxin system AbiEi family antito Rv2827c Rv2825c (dark) — hypothetical protein Rv2825c Rv3779 (family_assigned) — DUF6541 family protein Rv3779 fadB2 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB2 fadB2 fadB3 (requalified) — 3-hydroxybutyryl-CoA dehydrogenase FadB fadB3 fadE7 (requalified) — acyl-CoA dehydrogenase fadE7 fadE4 (family_assigned) — acyl-CoA dehydrogenase family protein fadE4 fadE1 (requalified) — acyl-CoA dehydrogenase FadE1 fadE1 fadE2 (requalified) — acyl-CoA dehydrogenase fadE2 lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv2090 (requalified) — 5'-3' exonuclease Rv2090 mku (requalified) — Ku protein mku xthA (requalified) — exodeoxyribonuclease III protein XthA xthA Rv0393 (family_assigned) — hypothetical protein Rv0393 end (requalified) — deoxyribonuclease IV end Rv1155 (requalified) — PPOX class F420-dependent oxidoreductase Rv1155 Rv2569c (family_assigned) — transglutaminase family protein Rv2569c Rv2568c (family_assigned) — putative zinc-binding metallopeptidase Rv2568c Rv2036 (family_assigned) — maleylpyruvate isomerase family mycothiol-dependen Rv2036 Rv1868 (family_assigned) — NAD(P)H-binding protein Rv1868 Rv0541c (family_assigned) — integral membrane protein Rv0541c ligB (requalified) — ATP-dependent DNA ligase ligB Rv0268c (family_assigned) — hypothetical protein Rv0268c fadD2 (requalified) — long-chain-fatty-acid--CoA ligase FadD2 fadD2 Rv0265c (family_assigned) — iron ABC transporter substrate-binding lipoprotein Rv0265c lhr (requalified) — ATP-dependent helicase lhr Rv3732 (dark) — DUF2330 domain-containing protein Rv3732 Rv0939 (family_assigned) — fumarylacetoacetate hydrolase family protein Rv0939 polA (requalified) — DNA polymerase I polA Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183 Rv3060c (family_assigned) — FCD domain-containing protein Rv3060c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.