MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2787 · 45 genes shown · anchor sirR · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2787 (family_assigned) — AAA family ATPase Rv2787 sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR Rv2209 (requalified) — MFS transporter Rv2209 PE_PGRS30 (family_assigned) — PE-PGRS family protein PE_PGRS30 PE_PGRS30 PE_PGRS28 (family_assigned) — PE-PGRS family protein PE_PGRS28 PE_PGRS28 PPE8 (family_assigned) — PPE family protein PPE8 PPE8 ribF (requalified) — bifunctional riboflavin kinase /FMN adenylyltransf ribF Rv1366 (family_assigned) — GTP pyrophosphokinase family protein Rv1366 csm5 (requalified) — type III-A CRISPR-associated RAMP protein Csm5 csm5 PPE56 (family_assigned) — PPE family protein PPE56 PPE56 Rv1004c (family_assigned) — hypothetical protein Rv1004c PPE55 (family_assigned) — PPE family protein PPE55 PPE55 PE_PGRS43 (family_assigned) — PE-PGRS family protein PE_PGRS43 PE_PGRS43 Rv1725c (family_assigned) — winged helix-turn-helix transcriptional regulator Rv1725c Rv3066 (family_assigned) — TetR/AcrR family transcriptional regulator Rv3066 sigJ (family_assigned) — sigma-70 family RNA polymerase sigma factor SigJ sigJ Rv2488c (family_assigned) — LuxR family transcriptional regulator Rv2488c Rv1019 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1019 Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c iniB (requalified) — isoniazid-induced protein IniB iniB PPE54 (family_assigned) — PPE family protein PPE54 PPE54 PPE34 (family_assigned) — PPE family protein PPE34 PPE34 Rv2082 (dark) — DUF5631 domain-containing protein Rv2082 PPE6 (family_assigned) — PPE family protein PPE6 PPE6 PPE5 (family_assigned) — PPE family protein PPE5 PPE5 cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT ribC (requalified) — riboflavin synthase ribC ribH (requalified) — 6%2C7-dimethyl-8-ribityllumazine synthase ribH truB (requalified) — tRNA pseudouridine(55) synthase TruB truB rpsO (requalified) — 30S ribosomal protein S15 rpsO lppU (dark) — hypothetical protein lppU cmk (requalified) — (d)CMP kinase cmk Rv1366A (family_assigned) — hypothetical protein Rv1366A csm4 (requalified) — type III-A CRISPR-associated RAMP protein Csm4 csm4 csm3 (requalified) — type III-A CRISPR-associated RAMP protein Csm3 csm3 csm2 (requalified) — type III-A CRISPR-associated protein Csm2 csm2 cas10 (requalified) — type III-A CRISPR-associated protein Cas10/Csm1 cas10 Rv2824c (requalified) — CRISPR-associated endoribonuclease Cas6 Rv2824c Rv2818c (requalified) — CRISPR-associated protein Csm6 Rv2818c espE (requalified) — type VII secretion system ESX-1 associated protein espE rplD (requalified) — 50S ribosomal protein L4 rplD ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY rpsB (requalified) — 30S ribosomal protein S2 rpsB rplJ (requalified) — 50S ribosomal protein L10 rplJ rplX (requalified) — 50S ribosomal protein L24 rplX

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.