MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2689c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2689c (requalified) — class I SAM-dependent RNA methyltransferase Rv2689c Rv2690c (family_assigned) — integral membrane protein Rv2690c ceoB (requalified) — TRK system potassium uptake protein CeoB ceoB ceoC (requalified) — TRK system potassium uptake protein CeoC ceoC trmI (requalified) — tRNA (adenine(58)-N(1))-methyltransferase TrmI trmI pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB Rv2681 (requalified) — ribonuclease D Rv2681 rsmI (requalified) — 16S rRNA (cytidine(1402)-2'-O)-methyltransferase rsmI Rv2686c (family_assigned) — fluoroquinolones efflux ABC transporter permease Rv2686c Rv2687c (family_assigned) — fluoroquinolone transporter permease Rv2687c fmu (requalified) — 16S rRNA m5C967 methyltransferase fmu treS (requalified) — maltose alpha-D-glucosyltransferase treS glgE (requalified) — alpha-1,4-glucan:maltose-1-phosphate maltosyltrans glgE aglA (family_assigned) — glycoside hydrolase family 13 protein aglA Rv2694c (family_assigned) — OB-fold nucleic acid binding domain-containing pro Rv2694c Rv0260c (requalified) — uroporphyrinogen-III synthase Rv0260c trmB (requalified) — tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB Rv2119 (family_assigned) — RecB family exonuclease Rv2119 rpmD (requalified) — 50S ribosomal protein L30 rpmD rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG pheS (family_assigned) — phenylalanine--tRNA ligase subunit alpha pheS leuS (requalified) — leucine--tRNA ligase leuS ileS (requalified) — isoleucine--tRNA ligase ileS rpsB (requalified) — 30S ribosomal protein S2 rpsB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rplO (requalified) — 50S ribosomal protein L15 rplO Rv1700 (requalified) — ADP-ribose diphosphatase Rv1700 Rv3672c (requalified) — CoA pyrophosphatase Rv3672c Rv2609c (family_assigned) — NUDIX domain-containing protein Rv2609c rhlE (requalified) — DEAD/DEAH box helicase rhlE deaD (requalified) — DEAD/DEAH box helicase deaD gadB (requalified) — glutamate decarboxylase gadB cysS1 (requalified) — cysteine--tRNA ligase cysS1 rplK (requalified) — 50S ribosomal protein L11 rplK ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD carD (requalified) — RNA polymerase-binding transcription factor CarD carD rphA (requalified) — ribonuclease PH rphA rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv2680 (dark) — DUF3000 domain-containing protein Rv2680 rpsD (requalified) — 30S ribosomal protein S4 rpsD rpsK (requalified) — 30S ribosomal protein S11 rpsK rplD (requalified) — 50S ribosomal protein L4 rplD

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.