MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2588c · 40 genes shown · anchor secD · open gene page → · ← back to 1 hop

Evidence: Min score 0
yajC (family_assigned) — preprotein translocase subunit YajC yajC secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY secG (family_assigned) — preprotein translocase subunit SecG secG secD (family_assigned) — protein translocase subunit SecD secD yidC (requalified) — membrane protein insertase YidC yidC secA2 (requalified) — accessory Sec system translocase SecA2 secA2 ffh (requalified) — signal recognition particle protein ffh secA1 (family_assigned) — protein translocase subunit SecA secA1 ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY secF (family_assigned) — protein translocase subunit SecF secF Rv2585c (family_assigned) — ABC transporter substrate-binding protein Rv2585c gabT (requalified) — 4-aminobutyrate--2-oxoglutarate transaminase gabT nusG (requalified) — transcription termination/antitermination protein nusG rplK (requalified) — 50S ribosomal protein L11 rplK rplA (requalified) — 50S ribosomal protein L1 rplA rplR (requalified) — 50S ribosomal protein L18 rplR rplE (requalified) — 50S ribosomal protein L5 rplE rpsC (requalified) — 30S ribosomal protein S3 rpsC rplF (requalified) — 50S ribosomal protein L6 rplF rplV (requalified) — 50S ribosomal protein L22 rplV pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT rnpA (requalified) — ribonuclease P protein component rnpA yidD (requalified) — membrane protein insertion efficiency factor YidD yidD Rv3920c (family_assigned) — R3H domain-containing nucleic acid-binding protein Rv3920c rplD (requalified) — 50S ribosomal protein L4 rplD Rv3362c (family_assigned) — ATP/GTP-binding protein Rv3362c rplW (requalified) — 50S ribosomal protein L23 rplW apt (requalified) — adenine phosphoribosyltransferase apt oppC (family_assigned) — ABC transporter permease oppC oppB (family_assigned) — ABC transporter permease oppB dppD (family_assigned) — ABC transporter ATP-binding protein dppD oppD (family_assigned) — ABC transporter ATP-binding protein oppD oppA (family_assigned) — oligopeptide ABC transporter substrate-binding pro oppA pcd (requalified) — piperideine-6-carboxylic acid dehydrogenase pcd Rv0147 (requalified) — aldehyde dehydrogenase Rv0147 gabD1 (requalified) — succinate-semialdehyde dehydrogenase gabD1 mmsA (requalified) — CoA-acylating methylmalonate-semialdehyde dehydrog mmsA Rv0223c (requalified) — aldehyde dehydrogenase Rv0223c gabD2 (requalified) — succinic semialdehyde dehydrogenase gabD2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.