MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2526 · 46 genes shown · anchor vapC17 · open gene page → · ← back to 1 hop

Evidence: Min score 0
vapB17 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB17 vapC17 (family_assigned) — PIN domain-containing protein vapC17 vapC6 (requalified) — ribonuclease VapC6 vapC6 vapC3 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC3 argD (requalified) — acetylornithine transaminase argD argR (requalified) — arginine repressor argR argJ (requalified) — bifunctional glutamate N-acetyltransferase/amino-a argJ csm5 (requalified) — type III-A CRISPR-associated RAMP protein Csm5 csm5 argH (requalified) — argininosuccinate lyase argH vapC30 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC30 Rv2653c (requalified) — type II toxin-antitoxin system toxin Rv2653c vapC38 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC38 vapB31 (family_assigned) — ribbon-helix-helix protein%2C CopG family vapB31 vapB2 (requalified) — type II toxin-antitoxin system antitoxin VapB2 vapB2 vapB41 (requalified) — antitoxin VapB41 vapB41 vapB14 (requalified) — antitoxin vapB14 glmS (requalified) — glutamine--fructose-6-phosphate transaminase (isom glmS vapC20 (requalified) — type II toxin-antitoxin system toxin 23S rRNA-spec vapC20 vapB6 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB6 Rv0658c (family_assigned) — CPBP family intramembrane glutamic endopeptidase Rv0658c vapC12 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC12 vapB3 (family_assigned) — type II toxin-antitoxin system CcdA family antitox vapB3 vapC9 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC9 Rv3098A (family_assigned) — PemK-like protein Rv3098A vapC46 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC46 vapB47 (requalified) — antitoxin VapB47 vapB47 vapC35 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC35 argC (requalified) — N-acetyl-gamma-glutamyl-phosphate reductase argC argB (requalified) — acetylglutamate kinase argB argF (requalified) — ornithine carbamoyltransferase argF argG (requalified) — argininosuccinate synthase argG csm4 (requalified) — type III-A CRISPR-associated RAMP protein Csm4 csm4 csm3 (requalified) — type III-A CRISPR-associated RAMP protein Csm3 csm3 csm2 (requalified) — type III-A CRISPR-associated protein Csm2 csm2 cas10 (requalified) — type III-A CRISPR-associated protein Cas10/Csm1 cas10 Rv2824c (requalified) — CRISPR-associated endoribonuclease Cas6 Rv2824c Rv2818c (requalified) — CRISPR-associated protein Csm6 Rv2818c vapB30 (requalified) — type II toxin-antitoxin system antitoxin VapB30 vapB30 vapB34 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB34 parD1 (family_assigned) — type II toxin-antitoxin system ParD family antitox parD1 Rv1395 (family_assigned) — HTH-type transcriptional regulator Rv1395 ethR (family_assigned) — HTH-type transcriptional regulator EthR ethR sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR Rv2652c (requalified) — prophage protein Rv2652c Rv2655c (family_assigned) — DUF3631 domain-containing protein Rv2655c Rv2656c (dark) — DUF2742 domain-containing protein Rv2656c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.