MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2218 · 46 genes shown · anchor lipB · open gene page → · ← back to 1 hop

Evidence: Min score 0
lipA (requalified) — lipoyl synthase lipA lipB (requalified) — lipoyl(octanoyl) transferase LipB lipB dlaT (requalified) — 2-oxoglutarate dehydrogenase%2C E2 component%2C di dlaT gcvH (requalified) — glycine cleavage system protein GcvH gcvH Rv2219 (family_assigned) — DUF4191 domain-containing protein Rv2219 Rv2216 (family_assigned) — TIGR01777 family oxidoreductase Rv2216 bkdC (family_assigned) — dihydrolipoamide acetyltransferase family protein bkdC lpdC (requalified) — dihydrolipoyl dehydrogenase lpdC tkt (requalified) — transketolase tkt gcvB (requalified) — aminomethyl-transferring glycine dehydrogenase gcvB pepQ (family_assigned) — Xaa-Pro peptidase family protein pepQ pepE (family_assigned) — Xaa-Pro peptidase family protein pepE lpdA (requalified) — NAD(P)H-quinone dehydrogenase lpdA fas (requalified) — fatty acid synthase fas Rv1248c (family_assigned) — multifunctional oxoglutarate decarboxylase/oxoglut Rv1248c bkdB (family_assigned) — 3-methyl-2-oxobutanoate dehydrogenase subunit beta bkdB aceE (requalified) — pyruvate dehydrogenase E1 component aceE sucC (family_assigned) — ADP-forming succinate--CoA ligase subunit beta sucC bkdA (family_assigned) — pyruvate dehydrogenase (acetyl-transferring) E1 co bkdA gcvT (requalified) — aminomethyltransferase gcvT glyA2 (requalified) — serine hydroxymethyltransferase glyA2 glyA1 (requalified) — serine hydroxymethyltransferase glyA1 Rv2708c (family_assigned) — hypothetical protein Rv2708c Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 arcA (requalified) — arginine deiminase arcA ephD (family_assigned) — SDR family oxidoreductase ephD Rv0843 (family_assigned) — thiamine pyrophosphate-dependent dehydrogenase E1 Rv0843 accA1 (family_assigned) — acetyl/propionyl/methylcrotonyl-CoA carboxylase su accA1 tal (requalified) — transaldolase tal pgi (requalified) — glucose-6-phosphate isomerase pgi rpe (requalified) — ribulose-phosphate 3-epimerase rpe zwf2 (requalified) — glucose-6-phosphate dehydrogenase zwf2 fba (requalified) — class II fructose-bisphosphate aldolase fba glpX (requalified) — class II fructose-bisphosphatase glpX purD (requalified) — phosphoribosylamine--glycine ligase purD efp (requalified) — elongation factor P efp Rv2532c (requalified) — antitermination protein NusB Rv2532c nusB (requalified) — transcription antitermination factor NusB nusB Rv2536 (family_assigned) — B-4DMT family transporter Rv2536 Rv2531c (requalified) — amino acid decarboxylase Rv2531c nadE (requalified) — NAD(+) synthase nadE Rv2090 (requalified) — 5'-3' exonuclease Rv2090 Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 Rv0480c (family_assigned) — carbon-nitrogen hydrolase family protein Rv0480c serA1 (requalified) — D-3-phosphoglycerate dehydrogenase serA1 trpS (requalified) — tryptophan--tRNA ligase trpS

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.