MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2166c · 46 genes shown · anchor rsmH · open gene page → · ← back to 1 hop

Evidence: Min score 0
mraZ (requalified) — division/cell wall cluster transcriptional repress mraZ rsmH (requalified) — 16S rRNA (cytosine(1402)-N(4))-methyltransferase R rsmH pbpB (requalified) — D%2CD-transpeptidase PbpB pbpB Rv2164c (family_assigned) — hypothetical protein Rv2164c ftsK (requalified) — DNA translocase FtsK ftsK Rv2169c (dark) — DUF3040 domain-containing protein Rv2169c murF (requalified) — UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin murF pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT murE (requalified) — UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2%2C6-d murE murX (requalified) — phospho-N-acetylmuramoyl-pentapeptide-transferase murX parB (family_assigned) — ParB/RepB/Spo0J family partition protein parB PE_PGRS38 (family_assigned) — PE-PGRS family protein PE_PGRS38 PE_PGRS38 murD (requalified) — UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase murD rpsI (requalified) — 30S ribosomal protein S9 rpsI rpsP (requalified) — 30S ribosomal protein S16 rpsP rpsF (requalified) — 30S ribosomal protein S6 rpsF ftsW (family_assigned) — putative lipid II flippase FtsW ftsW pbpA (requalified) — D%2CD-transpeptidase PbpA pbpA ftsQ (requalified) — cell division protein FtsQ ftsQ murC (requalified) — UDP-N-acetylmuramate--L-alanine ligase murC ptrp (family_assigned) — hypothetical protein ptrp Rv3909 (dark) — hypothetical protein Rv3909 parA (requalified) — chromosome partitioning protein ParA parA Rv2751 (requalified) — class I SAM-dependent methyltransferase Rv2751 Rv1708 (requalified) — initiation inhibitor protein Rv1708 xerC (requalified) — tyrosine recombinase XerC xerC Rv2170 (requalified) — N-acetyltransferase Rv2170 Rv2199c (family_assigned) — cytochrome c oxidase subunit 4 Rv2199c Rv2680 (dark) — DUF3000 domain-containing protein Rv2680 qcrC (requalified) — cytochrome c qcrC Rv2146c (family_assigned) — YggT family protein Rv2146c Rv2256c (dark) — hypothetical protein Rv2256c murG (requalified) — undecaprenyldiphospho-muramoylpentapeptide beta-N- murG ddlA (requalified) — D-alanine--D-alanine ligase DdlA ddlA pheS (family_assigned) — phenylalanine--tRNA ligase subunit alpha pheS leuS (requalified) — leucine--tRNA ligase leuS ileS (requalified) — isoleucine--tRNA ligase ileS rpsB (requalified) — 30S ribosomal protein S2 rpsB rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rplO (requalified) — 50S ribosomal protein L15 rplO gid (requalified) — 16S rRNA (guanine(527)-N(7))-methyltransferase Rsm gid Rv3213c (family_assigned) — AAA family ATPase Rv3213c Rv3920c (family_assigned) — R3H domain-containing nucleic acid-binding protein Rv3920c yidC (requalified) — membrane protein insertase YidC yidC Rv2161c (family_assigned) — TIGR03619 family F420-dependent LLM class oxidored Rv2161c Rv2160c (family_assigned) — Conserved hypothetical protein Rv2160c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.