MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2164c · 46 genes shown · anchor pbpB · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2164c (family_assigned) — hypothetical protein Rv2164c pbpB (requalified) — D%2CD-transpeptidase PbpB pbpB ftsQ (requalified) — cell division protein FtsQ ftsQ rsmH (requalified) — 16S rRNA (cytosine(1402)-N(4))-methyltransferase R rsmH mraZ (requalified) — division/cell wall cluster transcriptional repress mraZ ptrp (family_assigned) — hypothetical protein ptrp Rv3909 (dark) — hypothetical protein Rv3909 Rv3835 (family_assigned) — septum formation family protein Rv3835 Rv2709 (dark) — DUF3099 domain-containing protein Rv2709 Rv3658c (family_assigned) — type II secretion system F family protein Rv3658c cpnT (requalified) — outer membrane channel protein/necrotizing toxin g cpnT Rv2843 (family_assigned) — hypothetical protein Rv2843 papA5 (requalified) — phthiocerol/phthiodiolone dimycocerosyl transferas papA5 ftsW (family_assigned) — putative lipid II flippase FtsW ftsW pbpA (requalified) — D%2CD-transpeptidase PbpA pbpA murC (requalified) — UDP-N-acetylmuramate--L-alanine ligase murC murG (requalified) — undecaprenyldiphospho-muramoylpentapeptide beta-N- murG murD (requalified) — UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase murD murF (requalified) — UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanin murF Rv1024 (family_assigned) — septum formation initiator family protein Rv1024 rpsI (requalified) — 30S ribosomal protein S9 rpsI rpsP (requalified) — 30S ribosomal protein S16 rpsP rpsF (requalified) — 30S ribosomal protein S6 rpsF ftsK (requalified) — DNA translocase FtsK ftsK Rv2169c (dark) — DUF3040 domain-containing protein Rv2169c Rv0539 (requalified) — dolichyl-phosphate sugar synthase Rv0539 Rv0540 (family_assigned) — DUF2064 domain-containing protein Rv0540 Rv1775 (family_assigned) — hypothetical protein Rv1775 murJ (requalified) — murein biosynthesis integral membrane protein MurJ murJ mutT4 (requalified) — NUDIX hydrolase mutT4 sigM (requalified) — ECF RNA polymerase sigma factor SigM sigM rsmA (requalified) — anti-sigma-M factor RsmA rsmA Rv3906c (requalified) — pullulanase Rv3906c Rv3836 (family_assigned) — metallopeptidase family protein Rv3836 serS (requalified) — serine--tRNA ligase serS Rv2708c (family_assigned) — hypothetical protein Rv2708c Rv0007 (dark) — DUF3566 domain-containing protein Rv0007 Rv2520c (dark) — DUF3618 domain-containing protein Rv2520c Rv3659c (requalified) — conjugal transfer protein Rv3659c Rv3657c (family_assigned) — membrane protein Rv3657c Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c Rv3655c (requalified) — apoptosis inhibitor Rv3655c ssd (requalified) — septum site-determining protein Ssd ssd Rv3656c (dark) — DUF4244 domain-containing protein Rv3656c ift (requalified) — necrotizing toxin immunity factor IFT ift esxE (requalified) — ESAT-6 like protein EsxE esxE

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.