MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2119 · 46 genes shown · anchor trmI · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2119 (family_assigned) — RecB family exonuclease Rv2119 trmI (requalified) — tRNA (adenine(58)-N(1))-methyltransferase TrmI trmI adnA (requalified) — ATP-dependent DNA helicase AdnA adnA Rv3259 (family_assigned) — metallopeptidase family protein Rv3259 whiB3 (family_assigned) — redox-responsive transcriptional regulator WhiB3 whiB3 uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3662c (requalified) — oxidoreductase Rv3662c pimA (requalified) — phosphatidyl-myo-inositol alpha-mannosyltransferas pimA dnaB (requalified) — replicative DNA helicase dnaB pafA (requalified) — Pup--protein ligase pafA Rv2028c (requalified) — universal stress protein Rv2028c uvrD2 (requalified) — ATP-dependent DNA helicase UvrD2 uvrD2 Rv3363c (family_assigned) — DUF742 domain-containing protein Rv3363c trmB (requalified) — tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB rpmD (requalified) — 50S ribosomal protein L30 rpmD Rv2689c (requalified) — class I SAM-dependent RNA methyltransferase Rv2689c rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG adnB (requalified) — ATP-dependent DNA helicase AdnB adnB Rv2191 (family_assigned) — hypothetical protein Rv2191 nudC (requalified) — NAD(+) diphosphatase nudC radA (requalified) — DNA repair protein RadA radA Rv3200c (family_assigned) — potassium channel family protein Rv3200c Rv3258c (dark) — hypothetical protein Rv3258c pmmA (requalified) — phosphomannomutase/phosphoglucomutase pmmA Rv3256c (requalified) — TobH protein Rv3256c Rv1417 (family_assigned) — PH domain-containing protein Rv1417 Rv3231c (family_assigned) — hypothetical protein Rv3231c crgA (requalified) — cell division protein CrgA crgA Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c sigA (requalified) — RNA polymerase sigma factor sigA Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv3415c (family_assigned) — hypothetical protein Rv3415c Rv3220c (family_assigned) — histidine kinase N-terminal domain-containing prot Rv3220c mku (requalified) — Ku protein mku uvrB (family_assigned) — excinuclease ABC subunit UvrB uvrB Rv0948c (requalified) — chorismate mutase Rv0948c dppD (family_assigned) — ABC transporter ATP-binding protein dppD dppC (family_assigned) — dipeptide ABC transporter permease DppC dppC dppB (family_assigned) — ABC transporter permease dppB dppA (family_assigned) — ABC transporter substrate-binding protein dppA Rv0487 (family_assigned) — YbjN domain-containing protein Rv0487 Rv2611c (requalified) — phosphatidylinositol mannoside acyltransferase Rv2611c Rv2609c (family_assigned) — NUDIX domain-containing protein Rv2609c pgsA1 (requalified) — CDP-diacylglycerol--inositol 3-phosphatidyltransfe pgsA1 pimB (requalified) — GDP-mannose-dependent alpha-(1-6)-phosphatidylinos pimB

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.