MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2118c · 46 genes shown · anchor rpoZ · open gene page → · ← back to 1 hop

Evidence: Min score 0
trmI (requalified) — tRNA (adenine(58)-N(1))-methyltransferase TrmI trmI trmB (requalified) — tRNA (guanosine(46)-N7)-methyltransferase TrmB trmB Rv2119 (family_assigned) — RecB family exonuclease Rv2119 rpmD (requalified) — 50S ribosomal protein L30 rpmD Rv2689c (requalified) — class I SAM-dependent RNA methyltransferase Rv2689c rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 gltB (family_assigned) — glutamate synthase large subunit gltB ksgA (requalified) — 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-d ksgA whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 Rv2613c (requalified) — ATP adenylyltransferase Rv2613c Rv0207c (family_assigned) — NYN domain-containing protein Rv0207c mmpL3 (requalified) — trehalose monomycolate RND transporter MmpL3 mmpL3 Rv0210 (family_assigned) — hypothetical protein Rv0210 Rv0209 (family_assigned) — hypothetical protein Rv0209 truB (requalified) — tRNA pseudouridine(55) synthase TruB truB adnA (requalified) — ATP-dependent DNA helicase AdnA adnA Rv3259 (family_assigned) — metallopeptidase family protein Rv3259 whiB3 (family_assigned) — redox-responsive transcriptional regulator WhiB3 whiB3 uvrD1 (requalified) — ATP-dependent DNA helicase UvrD uvrD1 Rv3662c (requalified) — oxidoreductase Rv3662c rpsG (requalified) — 30S ribosomal protein S7 rpsG rpsD (requalified) — 30S ribosomal protein S4 rpsD rplW (requalified) — 50S ribosomal protein L23 rplW rpsF (requalified) — 30S ribosomal protein S6 rpsF rplP (requalified) — 50S ribosomal protein L16 rplP rpsS (requalified) — 30S ribosomal protein S19 rpsS Rv2690c (family_assigned) — integral membrane protein Rv2690c ceoB (requalified) — TRK system potassium uptake protein CeoB ceoB ceoC (requalified) — TRK system potassium uptake protein CeoC ceoC pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT Rv3433c (requalified) — NAD(P)H-hydrate dehydratase Rv3433c rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigA (requalified) — RNA polymerase sigma factor sigA rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY yidC (requalified) — membrane protein insertase YidC yidC secA1 (family_assigned) — protein translocase subunit SecA secA1 secA2 (requalified) — accessory Sec system translocase SecA2 secA2 ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.