MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2090 · 44 genes shown · anchor recA · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv2090 (requalified) — 5'-3' exonuclease Rv2090 lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv1277 (family_assigned) — hypothetical protein Rv1277 recA (requalified) — intein-containing recombinase RecA recA Rv2529 (family_assigned) — hypothetical protein Rv2529 ligC (requalified) — ATP-dependent DNA ligase ligC ligD (requalified) — ATP-dependent DNA ligase ligD ligB (requalified) — ATP-dependent DNA ligase ligB helZ (requalified) — DEAD/DEAH box helicase helZ Rv1278 (family_assigned) — AAA family ATPase Rv1278 pepE (family_assigned) — Xaa-Pro peptidase family protein pepE dinG (requalified) — ATP-dependent helicase DinG dinG polA (requalified) — DNA polymerase I polA dnaA (requalified) — chromosomal replication initiator protein DnaA dnaA dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX Rv1279 (family_assigned) — GMC family oxidoreductase N-terminal domain-contai Rv1279 recX (requalified) — recombination regulator RecX recX lexA (requalified) — transcriptional repressor LexA lexA radA (requalified) — DNA repair protein RadA radA topA (requalified) — type I DNA topoisomerase topA lprE (family_assigned) — LppP/LprE family lipoprotein lprE rplA (requalified) — 50S ribosomal protein L1 rplA ligD (requalified) — non-homologous end-joining DNA ligase ligD Rv0269c (requalified) — DNA polymerase domain-containing protein Rv0269c mku (requalified) — Ku protein mku Rv0939 (family_assigned) — fumarylacetoacetate hydrolase family protein Rv0939 ligA (requalified) — NAD-dependent DNA ligase LigA ligA fadE22 (requalified) — acyl-CoA dehydrogenase fadE22 Rv2102 (family_assigned) — hypothetical protein Rv2102 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC Rv2133c (family_assigned) — SCO1664 family protein Rv2133c nadE (requalified) — NAD(+) synthase nadE Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 Rv0480c (family_assigned) — carbon-nitrogen hydrolase family protein Rv0480c serA1 (requalified) — D-3-phosphoglycerate dehydrogenase serA1 trpS (requalified) — tryptophan--tRNA ligase trpS mec (requalified) — CysO-cysteine peptidase mec

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.