MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv2089c · 46 genes shown · open gene page → · ← back to 1 hop

Evidence: Min score 0
pepE (family_assigned) — Xaa-Pro peptidase family protein pepE Rv2090 (requalified) — 5'-3' exonuclease Rv2090 nadE (requalified) — NAD(+) synthase nadE Rv0730 (requalified) — GCN5-like N-acetyltransferase Rv0730 Rv0480c (family_assigned) — carbon-nitrogen hydrolase family protein Rv0480c serA1 (requalified) — D-3-phosphoglycerate dehydrogenase serA1 trpS (requalified) — tryptophan--tRNA ligase trpS Rv0194 (family_assigned) — ABC transporter ATP-binding protein Rv0194 efp (requalified) — elongation factor P efp Rv1972 (requalified) — Mce associated membrane protein Rv1972 lipA (requalified) — lipoyl synthase lipA serA2 (requalified) — D-3-phosphoglycerate dehydrogenase SerA serA2 guaB1 (family_assigned) — GuaB1 family IMP dehydrogenase-related protein guaB1 lppK (family_assigned) — hypothetical protein lppK dnaN (family_assigned) — DNA polymerase III subunit beta dnaN Rv1277 (family_assigned) — hypothetical protein Rv1277 recA (requalified) — intein-containing recombinase RecA recA Rv2529 (family_assigned) — hypothetical protein Rv2529 ligC (requalified) — ATP-dependent DNA ligase ligC nadR (requalified) — nicotinamide-nucleotide adenylyltransferase nadR nadD (requalified) — nicotinate-nucleotide adenylyltransferase nadD cobB (requalified) — NAD-dependent protein deacylase cobB ppnK (requalified) — NAD kinase ppnK sthA (requalified) — Si-specific NAD(P)(+) transhydrogenase sthA nudC (requalified) — NAD(+) diphosphatase nudC gyrB (family_assigned) — DNA topoisomerase (ATP-hydrolyzing) subunit B gyrB xylB (requalified) — FGGY-family carbohydrate kinase xylB atpH (family_assigned) — F0F1 ATP synthase subunit B/delta atpH fucA (requalified) — L-fuculose-phosphate aldolase fucA Rv0479c (family_assigned) — DUF2993 domain-containing protein Rv0479c Rv0481c (family_assigned) — DUF2505 domain-containing protein Rv0481c murB (requalified) — UDP-N-acetylmuramate dehydrogenase murB lprQ (requalified) — L%2CD-transpeptidase LdtMt5 lprQ pgmA (requalified) — phosphoglucomutase (alpha-D-glucose-1%2C6-bisphosp pgmA icd1 (requalified) — NADP-dependent isocitrate dehydrogenase icd1 serC (requalified) — phosphoserine transaminase serC leuB (requalified) — 3-isopropylmalate dehydrogenase leuB gpm1 (requalified) — 2,3-bisphosphoglycerate-dependent phosphoglycerate gpm1 Rv2997 (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv2997 thrC (requalified) — threonine synthase thrC yhjD (requalified) — inner membrane protein YhjD yhjD pmmB (requalified) — phospho-sugar mutase pmmB Rv3338 (family_assigned) — Conserved hypothetical protein Rv3338 Rv3337 (family_assigned) — Conserved hypothetical protein Rv3337 pheT (family_assigned) — phenylalanine--tRNA ligase subunit beta pheT serS (requalified) — serine--tRNA ligase serS

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.