MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1960c · 46 genes shown · anchor parE1 · open gene page → · ← back to 1 hop

Evidence: Min score 0
parD1 (family_assigned) — type II toxin-antitoxin system ParD family antitox parD1 parE1 (family_assigned) — type II toxin-antitoxin system RelE/ParE family to parE1 vapC30 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC30 cobB (requalified) — NAD-dependent protein deacylase cobB lrpA (family_assigned) — transcriptional regulator LrpA lrpA Rv3488 (family_assigned) — PadR family transcriptional regulator Rv3488 nadR (requalified) — nicotinamide-nucleotide adenylyltransferase nadR Rv1167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv1167c Rv1395 (family_assigned) — HTH-type transcriptional regulator Rv1395 Rv0273c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0273c Rv3183 (family_assigned) — XRE family transcriptional regulator Rv3183 Rv3736 (family_assigned) — AraC family transcriptional regulator Rv3736 ethR (family_assigned) — HTH-type transcriptional regulator EthR ethR Rv2472 (dark) — hypothetical protein Rv2472 mazE9 (requalified) — antitoxin MazE9 mazE9 mazE3 (requalified) — antitoxin MazE3 mazE3 Rv1958c (dark) — hypothetical protein Rv1958c Rv1961 (family_assigned) — hypothetical protein Rv1961 vapB30 (requalified) — type II toxin-antitoxin system antitoxin VapB30 vapB30 vapB34 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB34 sirR (family_assigned) — manganese-binding transcriptional regulator MntR sirR nadE (requalified) — NAD(+) synthase nadE Rv1152 (family_assigned) — GntR family transcriptional regulator Rv1152 pncA (requalified) — pyrazinamidase PncA pncA nadD (requalified) — nicotinate-nucleotide adenylyltransferase nadD sthA (requalified) — Si-specific NAD(P)(+) transhydrogenase sthA lat (requalified) — L-lysine 6-transaminase lat Rv3292 (family_assigned) — VOC family protein Rv3292 Rv3167c (family_assigned) — TetR/AcrR family transcriptional regulator Rv3167c mftR (family_assigned) — mycofactocin system transcriptional regulator mftR oxyS (family_assigned) — LysR family transcriptional regulator OxyS oxyS Rv3840 (family_assigned) — transcriptional regulator Rv3840 Rv1176c (family_assigned) — PadR family transcriptional regulator Rv1176c iniR (family_assigned) — isoniazid response ATPase/transcriptional regulato iniR ppnK (requalified) — NAD kinase ppnK pncB2 (requalified) — nicotinate phosphoribosyltransferase pncB2 pncB1 (requalified) — nicotinate phosphoribosyltransferase pncB1 cinA (requalified) — competence/damage-inducible protein A cinA Rv3055 (family_assigned) — helix-turn-helix domain-containing protein Rv3055 Rv1556 (family_assigned) — TetR/AcrR family transcriptional regulator Rv1556 embR (requalified) — response regulator transcription factor EmbR embR Rv0653c (family_assigned) — TetR/AcrR family transcriptional regulator Rv0653c Rv1393c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv1393c Rv3833 (family_assigned) — helix-turn-helix transcriptional regulator Rv3833 Rv1190 (requalified) — alpha/beta fold hydrolase Rv1190 virS (family_assigned) — AraC family transcriptional regulator virS

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.