MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1830 · 46 genes shown · anchor rpoZ · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ secG (family_assigned) — preprotein translocase subunit SecG secG whiB2 (family_assigned) — transcriptional regulator WhiB2 whiB2 rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c Rv2219 (family_assigned) — DUF4191 domain-containing protein Rv2219 Rv1321 (requalified) — endonuclease NucS Rv1321 Rv2901c (dark) — DUF2469 domain-containing protein Rv2901c whiA (family_assigned) — DNA-binding protein WhiA whiA Rv3195 (requalified) — zinc-dependent metalloprotease Rv3195 whiB4 (family_assigned) — transcriptional regulator WhiB4 whiB4 rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigA (requalified) — RNA polymerase sigma factor sigA helZ (requalified) — DEAD/DEAH box helicase helZ secE1 (requalified) — preprotein translocase SecE secE1 secY (family_assigned) — preprotein translocase subunit SecY secY yidC (requalified) — membrane protein insertase YidC yidC secA1 (family_assigned) — protein translocase subunit SecA secA1 secA2 (requalified) — accessory Sec system translocase SecA2 secA2 ftsY (requalified) — signal recognition particle-docking protein FtsY ftsY clpS (requalified) — ATP-dependent Clp protease adapter ClpS clpS sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB Rv2239c (family_assigned) — hypothetical protein Rv2239c Rv2256c (dark) — hypothetical protein Rv2256c cei (requalified) — envelope integrity protein Cei cei lipB (requalified) — lipoyl(octanoyl) transferase LipB lipB lipA (requalified) — lipoyl synthase lipA Rv2216 (family_assigned) — TIGR01777 family oxidoreductase Rv2216 dlaT (requalified) — 2-oxoglutarate dehydrogenase%2C E2 component%2C di dlaT Rv2708c (family_assigned) — hypothetical protein Rv2708c Rv1322 (family_assigned) — hypothetical protein Rv1322 Rv1318c (family_assigned) — adenylate/guanylate cyclase domain-containing prot Rv1318c rnhB (requalified) — ribonuclease HII rnhB lepB (requalified) — signal peptidase I lepB rplS (requalified) — 50S ribosomal protein L19 rplS cuvA (requalified) — carbon utilization/virulence protein CuvA cuvA rapZ (requalified) — RNase adapter RapZ rapZ uvrC (family_assigned) — excinuclease ABC subunit UvrC uvrC xerC (requalified) — tyrosine recombinase XerC xerC Rv3194c (family_assigned) — PDZ domain-containing protein Rv3194c Rv3196 (family_assigned) — hypothetical protein Rv3196 clpP2 (family_assigned) — ATP-dependent CLP protease proteolytic subunit Clp clpP2

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.