MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1398c · 44 genes shown · anchor vapC10 · open gene page → · ← back to 1 hop

Evidence: Min score 0
vapB10 (family_assigned) — CopG family transcriptional regulator vapB10 vapC10 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC10 carD (requalified) — RNA polymerase-binding transcription factor CarD carD nlhH (family_assigned) — alpha/beta hydrolase nlhH lipI (family_assigned) — alpha/beta hydrolase lipI PE_PGRS25 (family_assigned) — PE-PGRS family protein PE_PGRS25 PE_PGRS25 rpmJ (requalified) — 50S ribosomal protein L36 rpmJ Rv2656c (dark) — DUF2742 domain-containing protein Rv2656c vapB26 (requalified) — type II toxin-antitoxin system antitoxin VapB26 vapB26 rpsH (requalified) — 30S ribosomal protein S8 rpsH Rv2657c (family_assigned) — helix-turn-helix domain-containing protein Rv2657c vapC32 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC32 Rv0611c (family_assigned) — DUF4926 domain-containing protein Rv0611c vapC20 (requalified) — type II toxin-antitoxin system toxin 23S rRNA-spec vapC20 rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 priA (family_assigned) — primosomal protein N' priA Rv1401 (family_assigned) — membrane protein Rv1401 Rv1393c (requalified) — NAD(P)/FAD-dependent oxidoreductase Rv1393c mbtJ (requalified) — acetyl hydrolase mbtJ lipY (requalified) — triacylglycerol lipase Lip lipY zmp1 (requalified) — zinc metalloprotease Zmp1 zmp1 Rv1146 (requalified) — transmembrane transport protein Rv1146 ripC (requalified) — peptidoglycan hydrolase RipC ripC rplU (requalified) — 50S ribosomal protein L21 rplU rpsC (requalified) — 30S ribosomal protein S3 rpsC rpmD (requalified) — 50S ribosomal protein L30 rpmD rplI (requalified) — 50S ribosomal protein L9 rplI rplF (requalified) — 50S ribosomal protein L6 rplF rplM (requalified) — 50S ribosomal protein L13 rplM Rv2655c (family_assigned) — DUF3631 domain-containing protein Rv2655c Rv2654c (requalified) — type II toxin-antitoxin system antitoxin Rv2654c Rv2658c (family_assigned) — hypothetical protein Rv2658c Rv2659c (requalified) — tyrosine-type recombinase/integrase Rv2659c Rv2653c (requalified) — type II toxin-antitoxin system toxin Rv2653c vapC26 (requalified) — type II toxin-antitoxin system toxin ribonuclease vapC26 Rv0580c (requalified) — mycobacterial cell wall protein Rv0580c Rv0580c Rv0579 (family_assigned) — Mut7-C RNAse domain-containing protein Rv0579 mog (family_assigned) — MogA/MoaB family molybdenum cofactor biosynthesis mog rplQ (requalified) — 50S ribosomal protein L17 rplQ

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.