MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1396c · 42 genes shown · anchor vapC10 · open gene page → · ← back to 1 hop

Evidence: Min score 0
PE_PGRS25 (family_assigned) — PE-PGRS family protein PE_PGRS25 PE_PGRS25 vapC10 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC10 vapB10 (family_assigned) — CopG family transcriptional regulator vapB10 zmp1 (requalified) — zinc metalloprotease Zmp1 zmp1 Rv1146 (requalified) — transmembrane transport protein Rv1146 ripC (requalified) — peptidoglycan hydrolase RipC ripC Rv3844 (requalified) — transposase Rv3844 Rv1115 (family_assigned) — hypothetical protein Rv1115 Rv3348 (requalified) — transposase Rv3348 PPE13 (family_assigned) — PPE family protein PPE13 PPE13 PPE9 (family_assigned) — PPE family protein PPE9 PPE9 nlhH (family_assigned) — alpha/beta hydrolase nlhH lipI (family_assigned) — alpha/beta hydrolase lipI Rv0611c (family_assigned) — DUF4926 domain-containing protein Rv0611c vapC20 (requalified) — type II toxin-antitoxin system toxin 23S rRNA-spec vapC20 carD (requalified) — RNA polymerase-binding transcription factor CarD carD rpmJ (requalified) — 50S ribosomal protein L36 rpmJ omamA (requalified) — hypothetical protein omamA omamB (requalified) — hypothetical protein omamB polA (requalified) — DNA polymerase I polA ruvB (requalified) — Holliday junction branch migration DNA helicase Ru ruvB Rv3633 (family_assigned) — phytanoyl-CoA dioxygenase family protein Rv3633 Rv1501 (family_assigned) — phytanoyl-CoA dioxygenase family protein Rv1501 Rv1145 (requalified) — transmembrane transport protein Rv1145 Rv1147 (family_assigned) — methyltransferase domain-containing protein Rv1147 rslA (requalified) — anti-sigma-L factor RslA rslA Rv2714 (family_assigned) — PAC2 family protein Rv2714 mmpL11 (requalified) — RND transporter MmpL11 mmpL11 PE_PGRS22 (family_assigned) — PE-PGRS family protein PE_PGRS22 PE_PGRS22 Rv0950c (family_assigned) — M23 family metallopeptidase Rv0950c Rv2189c (dark) — hypothetical protein Rv2189c fbpB (requalified) — diacylglycerol acyltransferase/mycolyltransferase fbpB ksgA (requalified) — 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-d ksgA Rv0175 (family_assigned) — hypothetical protein Rv0175 pimB (requalified) — GDP-mannose-dependent alpha-(1-6)-phosphatidylinos pimB Rv3845 (family_assigned) — IS110 family transposase Rv3845 Rv1116 (dark) — hypothetical protein Rv1116 vapB32 (family_assigned) — type II toxin-antitoxin system VapB family antitox vapB32 vapC32 (family_assigned) — type II toxin-antitoxin system VapC family toxin vapC32 Rv1111c (family_assigned) — DUF6542 domain-containing protein Rv1111c Rv3094c (family_assigned) — acyl-CoA dehydrogenase family protein Rv3094c Rv0987 (family_assigned) — FtsX-like permease family protein Rv0987

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.