MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1390 · 38 genes shown · anchor rbpA · open gene page → · ← back to 1 hop

Evidence: Min score 0
rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigA (requalified) — RNA polymerase sigma factor sigA rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA helZ (requalified) — DEAD/DEAH box helicase helZ sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB dinG (requalified) — ATP-dependent helicase DinG dinG carD (requalified) — RNA polymerase-binding transcription factor CarD carD gmk (requalified) — guanylate kinase gmk rplF (requalified) — 50S ribosomal protein L6 rplF mihF (requalified) — integration host factor MihF mihF rpsM (requalified) — 30S ribosomal protein S13 rpsM rpsH (requalified) — 30S ribosomal protein S8 rpsH whiB7 (family_assigned) — transcriptional regulator WhiB7 whiB7 sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL whiB1 (family_assigned) — transcriptional regulator WhiB1 whiB1 Rv2102 (family_assigned) — hypothetical protein Rv2102 Rv2133c (family_assigned) — SCO1664 family protein Rv2133c ideR (family_assigned) — iron-dependent transcriptional regulator IdeR ideR mec (requalified) — CysO-cysteine peptidase mec Rv1277 (family_assigned) — hypothetical protein Rv1277 polA (requalified) — DNA polymerase I polA guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA apt (requalified) — adenine phosphoribosyltransferase apt pykA (requalified) — pyruvate kinase pykA ndkA (requalified) — nucleoside-diphosphate kinase ndkA hpt (requalified) — hypoxanthine phosphoribosyltransferase hpt rpsD (requalified) — 30S ribosomal protein S4 rpsD rplW (requalified) — 50S ribosomal protein L23 rplW rpsG (requalified) — 30S ribosomal protein S7 rpsG rplS (requalified) — 50S ribosomal protein L19 rplS rpsR1 (requalified) — 30S ribosomal protein S18 rpsR1 rplB (requalified) — 50S ribosomal protein L2 rplB rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsQ (requalified) — 30S ribosomal protein S17 rpsQ rpsS (requalified) — 30S ribosomal protein S19 rpsS

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.