MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1234 · 46 genes shown · anchor lpqY · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1234 (requalified) — general stress protein Rv1234 lpqY (family_assigned) — trehalose ABC transporter substrate-binding protei lpqY sugA (family_assigned) — trehalose ABC transporter permease SugA sugA sugC (family_assigned) — trehalose ABC transporter ATP-binding protein SugC sugC sugB (family_assigned) — trehalose ABC transporter permease SugB sugB Rv1364c (family_assigned) — sigma factor regulatory protein Rv1364c lpqZ (family_assigned) — glycine betaine ABC transporter substrate-binding lpqZ proX (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proX ilvB2 (family_assigned) — thiamine pyrophosphate-binding protein ilvB2 bfrA (requalified) — bacterioferritin BfrA bfrA Rv1231c (family_assigned) — DUF1003 domain-containing protein Rv1231c Rv3278c (family_assigned) — PH domain-containing protein Rv3278c Rv1233c (family_assigned) — DUF4190 domain-containing protein Rv1233c uspA (family_assigned) — sugar ABC transporter permease uspA uspB (family_assigned) — sugar ABC transporter permease UspB uspB ugpC (family_assigned) — ABC transporter ATP-binding protein ugpC ugpC (family_assigned) — sn-glycerol-3-phosphate ABC transporter ATP-bindin ugpC Rv2041c (family_assigned) — sugar ABC transporter substrate-binding protein Rv2041c Rv2040c (family_assigned) — sugar ABC transporter permease Rv2040c ugpA (family_assigned) — sugar ABC transporter permease ugpA ugpB (family_assigned) — ABC transporter substrate-binding protein ugpB Rv1354c (requalified) — bifunctional diguanylate cyclase/phosphodiesterase Rv1354c fbiC (requalified) — bifunctional FO biosynthesis protein CofGH fbiC rsfA (requalified) — anti-sigma-F factor antagonist RsfA rsfA rsfB (family_assigned) — STAS domain-containing protein rsfB Rv1904 (requalified) — anti-sigma factor antagonist Rv1904 Rv2638 (requalified) — anti-sigma factor antagonist Rv2638 proV (family_assigned) — glycine betaine/L-proline ABC transporter ATP-bind proV proW (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proW proZ (family_assigned) — glycine betaine/carnitine/choline/L-proline ABC tr proZ mdh (requalified) — malate dehydrogenase mdh Rv3755c (family_assigned) — putative glycolipid-binding domain-containing prot Rv3755c Rv3760 (family_assigned) — membrane protein Rv3760 ilvN (family_assigned) — acetolactate synthase small subunit ilvN ilvC (requalified) — ketol-acid reductoisomerase ilvC leuB (requalified) — 3-isopropylmalate dehydrogenase leuB ilvA (requalified) — threonine ammonia-lyase ilvA ilvB1 (family_assigned) — acetolactate synthase large subunit IlvB ilvB1 ilvG (requalified) — acetolactate synthase ilvG mmcO (requalified) — multicopper oxidase MmcO mmcO bfrB (requalified) — ferritin BfrB bfrB hemZ (requalified) — ferrochelatase hemZ Rv1877 (family_assigned) — MDR family MFS transporter Rv1877 Rv1879 (family_assigned) — amidohydrolase family protein Rv1879 Rv1232c (requalified) — magnesium transporter Rv1232c Rv1230c (family_assigned) — lytic transglycosylase domain-containing protein Rv1230c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.