MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1221 · 46 genes shown · anchor rseA · open gene page → · ← back to 1 hop

Evidence: Min score 0
sigE (requalified) — RNA polymerase sigma factor SigE sigE rseA (requalified) — anti-sigma E factor RseA rseA sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB sigD (requalified) — ECF RNA polymerase sigma factor SigD sigD Rv1220c (requalified) — methyltransferase Rv1220c htrA (requalified) — serine protease HtrA htrA tatB (requalified) — Sec-independent protein translocase protein TatB tatB rshA (requalified) — anti-sigma factor RshA rshA rslA (requalified) — anti-sigma-L factor RslA rslA pepR (family_assigned) — pitrilysin family protein pepR rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv2520c (dark) — DUF3618 domain-containing protein Rv2520c Rv1083 (dark) — hypothetical protein Rv1083 rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA ideR (family_assigned) — iron-dependent transcriptional regulator IdeR ideR rsdA (requalified) — anti-sigma D factor RsdA rsdA Rv2721c (family_assigned) — LGFP repeat-containing protein Rv2721c Rv3415c (family_assigned) — hypothetical protein Rv3415c ripA (family_assigned) — NlpC/P60 family peptidoglycan endopeptidase RipA ripA pirG (requalified) — exported repetitive protein pirG Rv3717 (family_assigned) — hypothetical protein Rv3717 Rv1703c (requalified) — O-methyltransferase Rv1703c raaS (family_assigned) — transcriptional regulator RaaS raaS Rv1217c (family_assigned) — multidrug efflux ABC transporter permease Rv1217c Rv1216c (family_assigned) — isoprenylcysteine carboxylmethyltransferase family Rv1216c Rv1218c (family_assigned) — multidrug efflux ABC transporter ATP-binding prote Rv1218c mpa (requalified) — proteasome ATPase mpa glpK (requalified) — glycerol kinase GlpK glpK mec (requalified) — CysO-cysteine peptidase mec prcB (family_assigned) — proteasome subunit beta prcB guaA (requalified) — glutamine-hydrolyzing GMP synthase guaA tatC (family_assigned) — twin-arginine translocase subunit TatC tatC Rv1337 (family_assigned) — rhomboid family intramembrane serine protease Rv1337 sigH (family_assigned) — sigma-70 family RNA polymerase sigma factor SigH sigH Rv3222c (family_assigned) — hypothetical protein Rv3222c TB7.3 (requalified) — biotin/lipoyl-binding carrier protein TB7.3 Rv3224 (requalified) — NAD(P)-dependent oxidoreductase Rv3224 Rv3224B (family_assigned) — Conserved hypothetical protein Rv3224B moeB1 (requalified) — adenylyltransferase/sulfurtransferase MoeZ moeB1 sigL (family_assigned) — sigma-70 family RNA polymerase sigma factor SigL sigL Rv1145 (requalified) — transmembrane transport protein Rv1145 Rv0737 (family_assigned) — MarR family transcriptional regulator Rv0737

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.