MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1107c · 46 genes shown · anchor xseA · open gene page → · ← back to 1 hop

Evidence: Min score 0
xseB (family_assigned) — exodeoxyribonuclease VII small subunit xseB xseA (family_assigned) — exodeoxyribonuclease VII large subunit xseA Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv1106c (requalified) — 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-is Rv1106c lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 hemC (requalified) — hydroxymethylbilane synthase hemC rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c Rv3195 (requalified) — zinc-dependent metalloprotease Rv3195 Rv0807 (family_assigned) — sterol carrier family protein Rv0807 rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 yajC (family_assigned) — preprotein translocase subunit YajC yajC folD (requalified) — bifunctional methylenetetrahydrofolate dehydrogena folD nusG (requalified) — transcription termination/antitermination protein nusG Rv2091c (family_assigned) — DUF4333 domain-containing protein Rv2091c Rv3850 (family_assigned) — DUF6474 family protein Rv3850 cyp142 (requalified) — steroid C26-monooxygenase Cyp142 cyp142 cyp125 (requalified) — steroid C26-monooxygenase cyp125 choD (requalified) — cholesterol oxidase choD gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE rpsA (requalified) — 30S ribosomal protein S1 rpsA Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB hemD (requalified) — uroporphyrin-III C-methyltransferase hemD hemB (requalified) — porphobilinogen synthase hemB hemA (requalified) — glutamyl-tRNA reductase hemA cysG (requalified) — uroporphyrinogen-III C-methyltransferase cysG hemE (requalified) — uroporphyrinogen decarboxylase hemE Rv0260c (requalified) — uroporphyrinogen-III synthase Rv0260c rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA sigA (requalified) — RNA polymerase sigma factor sigA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB whiA (family_assigned) — DNA-binding protein WhiA whiA Rv2239c (family_assigned) — hypothetical protein Rv2239c Rv2256c (dark) — hypothetical protein Rv2256c cei (requalified) — envelope integrity protein Cei cei Rv3194c (family_assigned) — PDZ domain-containing protein Rv3194c Rv3196 (family_assigned) — hypothetical protein Rv3196 clpP2 (family_assigned) — ATP-dependent CLP protease proteolytic subunit Clp clpP2 Rv1998c (family_assigned) — isocitrate lyase/phosphoenolpyruvate mutase family Rv1998c Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.