MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1011 · 38 genes shown · anchor ispF · open gene page → · ← back to 1 hop

Evidence: Min score 0
ispE (requalified) — 4-diphosphocytidyl-2C-methyl-D-erythritol kinase ispE ispF (requalified) — 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate syn ispF ispD (requalified) — 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans ispD ksgA (requalified) — 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-d ksgA dxr (requalified) — 1-deoxy-D-xylulose-5-phosphate reductoisomerase dxr gcpE (requalified) — flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-e gcpE lytB2 (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase lytB2 Rv1012 (dark) — hypothetical protein Rv1012 pks16 (requalified) — fatty acyl-AMP ligase pks16 Rv3382c (requalified) — 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Rv3382c rpfB (requalified) — resuscitation-promoting factor RpfB rpfB dxs1 (requalified) — 1-deoxy-D-xylulose 5-phosphate synthase dxs1 dxs2 (requalified) — 1-deoxy-D-xylulose-5-phosphate synthase dxs2 carD (requalified) — RNA polymerase-binding transcription factor CarD carD rlmB (requalified) — 23S rRNA (guanosine(2251)-2'-O)-methyltransferase rlmB cysS1 (requalified) — cysteine--tRNA ligase cysS1 rpsD (requalified) — 30S ribosomal protein S4 rpsD rpsE (requalified) — 30S ribosomal protein S5 rpsE rpsI (requalified) — 30S ribosomal protein S9 rpsI rpsJ (requalified) — 30S ribosomal protein S10 rpsJ rip (requalified) — zinc metalloprotease Rip rip Rv2867c (family_assigned) — GNAT family N-acetyltransferase Rv2867c rpsA (requalified) — 30S ribosomal protein S1 rpsA idsA2 (requalified) — bifunctional (2E%2C6E)-farnesyl/geranyl diphosphat idsA2 idsA1 (requalified) — multifunctional dimethylallyltransferase/geranyltr idsA1 idsB (family_assigned) — polyprenyl synthetase family protein idsB mbtE (requalified) — peptide synthetase mbtE mbtF (requalified) — peptide synthetase mbtF Rv1592c (family_assigned) — lipase family protein Rv1592c rplF (requalified) — 50S ribosomal protein L6 rplF pks5 (requalified) — sulfolipid-1 biosynthesis phthioceranic/hydroxypht pks5 tatD (requalified) — deoxyribonuclease TatD tatD fbpB (requalified) — diacylglycerol acyltransferase/mycolyltransferase fbpB metS (requalified) — methionine--tRNA ligase metS Rv3268 (family_assigned) — hypothetical protein Rv3268 thiG (requalified) — thiazole synthase thiG Rv3378c (requalified) — diterpene synthase Rv3378c Rv3377c (requalified) — type B diterpene cyclase Rv3377c

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.