MTBC Gene Atlas

Functional interaction network

STRING v12 network (guilt-by-association). Node colour = annotation verdict, dashed outline = still hypothetical; edge colour = evidence type, width ∝ score. Drag nodes to rearrange, hover to highlight neighbours, click a partner to re-centre, click the centre to open its gene page.

Centre Rv1002c · 46 genes shown · anchor rsmI · open gene page → · ← back to 1 hop

Evidence: Min score 0
Rv1002c (requalified) — dolichyl-phosphate-mannose--protein mannosyltransf Rv1002c rsmI (requalified) — 16S rRNA (cytidine(1402)-2'-O)-methyltransferase rsmI Rv2219 (family_assigned) — DUF4191 domain-containing protein Rv2219 Rv2413c (family_assigned) — DNA polymerase III subunit delta Rv2413c Rv3311 (family_assigned) — primosomal protein Rv3311 Rv2146c (family_assigned) — YggT family protein Rv2146c rbpA (family_assigned) — RNA polymerase-binding protein RbpA rbpA Rv2708c (family_assigned) — hypothetical protein Rv2708c Rv2680 (dark) — DUF3000 domain-containing protein Rv2680 sepH (requalified) — septation protein SepH sepH Rv3212 (family_assigned) — hypothetical protein Rv3212 Rv3438 (family_assigned) — alpha/beta hydrolase Rv3438 Rv0004 (requalified) — DNA replication protein DciA Rv0004 Rv3752c (requalified) — nucleoside deaminase Rv3752c alr (requalified) — alanine racemase alr Rv2689c (requalified) — class I SAM-dependent RNA methyltransferase Rv2689c murG (requalified) — undecaprenyldiphospho-muramoylpentapeptide beta-N- murG ftsZ (requalified) — cell division protein FtsZ ftsZ lipB (requalified) — lipoyl(octanoyl) transferase LipB lipB lipA (requalified) — lipoyl synthase lipA Rv2216 (family_assigned) — TIGR01777 family oxidoreductase Rv2216 dlaT (requalified) — 2-oxoglutarate dehydrogenase%2C E2 component%2C di dlaT Rv1830 (family_assigned) — HTH-type transcriptional regulator Rv1830 Rv3644c (family_assigned) — DNA polymerase III subunit delta' Rv3644c dnaN (family_assigned) — DNA polymerase III subunit beta dnaN dnaZX (family_assigned) — DNA polymerase III subunits gamma/tau dnaZX dnaE1 (family_assigned) — DNA polymerase III subunit alpha dnaE1 Rv2191 (family_assigned) — hypothetical protein Rv2191 dnaQ (family_assigned) — DEDDh family exonuclease dnaQ sapM (requalified) — phosphatidylinositol-3-phosphatase sapM Rv1109c (requalified) — lipid droplet-associated protein Rv1109c Rv2520c (dark) — DUF3618 domain-containing protein Rv2520c Rv2446c (dark) — DUF4233 domain-containing protein Rv2446c Rv2147c (requalified) — cell division protein SepF Rv2147c wag31 (requalified) — cell wall synthesis protein Wag31 wag31 Rv2148c (family_assigned) — YggS family pyridoxal phosphate-dependent enzyme Rv2148c Rv2256c (dark) — hypothetical protein Rv2256c rpoA (family_assigned) — DNA-directed RNA polymerase subunit alpha rpoA rpoZ (family_assigned) — DNA-directed RNA polymerase subunit omega rpoZ sigA (requalified) — RNA polymerase sigma factor sigA rpoC (family_assigned) — DNA-directed RNA polymerase subunit beta' rpoC rpoB (family_assigned) — DNA-directed RNA polymerase subunit beta rpoB sigB (family_assigned) — sigma-70 family RNA polymerase sigma factor SigB sigB Rv2709 (dark) — DUF3099 domain-containing protein Rv2709 Rv2699c (dark) — DUF4193 domain-containing protein Rv2699c Rv2731 (family_assigned) — DUF349 domain-containing protein Rv2731

edges: ▬ experimental/database (measured) · ▬ genomic-context · ▬ co-expression / other  |  nodes: ● resolved · ● family assigned · ● dark · dashed = hypothetical.